JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HSD17B7_chr1_162785702_162817823	0/0	t0006	503	4	1	2	0	1	0	copy fasta	HSD17B7	chr1	162785702	162817823
HSD17B7_chr1_162785702_162817823	0/0	t0007	503	1	0	0	1	0	0	copy fasta	HSD17B7	chr1	162785702	162817823
HSD17B7_chr1_162785702_162817823	0/0	t0008	481	1	1	0	0	0	0	copy fasta	HSD17B7	chr1	162785702	162817823
HSD17B8_chr6_33199655_33211831	0/1	t0001	192	391	99	70	166	16	39	copy fasta	HSD17B8	chr6	33199655	33211831
HSD17B8_chr6_33199655_33211831	0/0	t0002	192	11	1	6	1	0	3	copy fasta	HSD17B8	chr6	33199655	33211831
HSD17B8_chr6_33199655_33211831	0/0	t0003	192	1	0	0	1	0	0	copy fasta	HSD17B8	chr6	33199655	33211831
HSD3B1_chr1_119502210_119520054	1/1	t0001	548	405	94	70	180	16	43	copy fasta	HSD3B1	chr1	119502210	119520054
HSD3B1_chr1_119502210_119520054	0/0	t0002	548	4	4	0	0	0	0	copy fasta	HSD3B1	chr1	119502210	119520054
HSD3B1_chr1_119502210_119520054	0/0	t0003	548	1	0	0	0	0	1	copy fasta	HSD3B1	chr1	119502210	119520054
HSD3B2_chr1_119410150_119428034	1/0	t0001	557	270	39	49	138	17	26	copy fasta	HSD3B2	chr1	119410150	119428034
HSD3B2_chr1_119410150_119428034	0/1	t0002	557	152	34	17	81	1	18	copy fasta	HSD3B2	chr1	119410150	119428034
HSD3B2_chr1_119410150_119428034	0/0	t0003	557	13	12	0	1	0	0	copy fasta	HSD3B2	chr1	119410150	119428034
HSD3B2_chr1_119410150_119428034	0/0	t0004	557	6	6	0	0	0	0	copy fasta	HSD3B2	chr1	119410150	119428034
HSD3B2_chr1_119410150_119428034	0/0	t0005	557	1	1	0	0	0	0	copy fasta	HSD3B2	chr1	119410150	119428034
HSD3B7_chr16_30980207_30994147	1/1	t0001	1062	305	90	62	92	16	43	copy fasta	HSD3B7	chr16	30980207	30994147
HSD3B7_chr16_30980207_30994147	0/0	t0002	1062	3	3	0	0	0	0	copy fasta	HSD3B7	chr16	30980207	30994147
HSD3B7_chr16_30980207_30994147	0/0	t0003	1062	1	1	0	0	0	0	copy fasta	HSD3B7	chr16	30980207	30994147
HSD3B7_chr16_30980207_30994147	0/0	t0004	1062	1	0	0	0	0	1	copy fasta	HSD3B7	chr16	30980207	30994147
HSD3B7_chr16_30980207_30994147	0/0	t0005	1062	1	0	0	0	0	1	copy fasta	HSD3B7	chr16	30980207	30994147
HSD3B7_chr16_30980207_30994147	0/0	t0006	1062	1	0	0	0	0	1	copy fasta	HSD3B7	chr16	30980207	30994147
HSD3B7_chr16_30980207_30994147	0/0	t0007	1049	1	0	0	1	0	0	copy fasta	HSD3B7	chr16	30980207	30994147
HSD3B7_chr16_30980207_30994147	0/0	t0008	1062	1	0	0	1	0	0	copy fasta	HSD3B7	chr16	30980207	30994147
HSDL1_chr16_84117141_84150177	0/0	t0001	2657	101	18	6	70	1	6	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	t0002	2656	95	6	23	48	8	10	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	t0003	2656	80	8	16	45	4	7	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	1/0	t0004	2656	62	7	22	18	2	12	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	t0005	2656	14	12	2	0	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/1	t0006	2658	13	7	3	0	0	2	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	t0007	2657	10	1	5	4	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	t0008	2656	8	8	0	0	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	t0009	2656	7	6	0	1	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	t0010	2658	5	5	0	0	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	t0011	2656	4	4	0	0	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	t0012	2656	4	0	0	4	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	t0013	2656	3	3	0	0	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	t0014	2656	3	3	0	0	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	t0015	2656	3	0	0	0	0	3	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	t0016	2657	3	0	0	3	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	t0017	2656	2	0	0	2	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	t0018	2656	2	0	0	2	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	t0019	2656	2	0	0	1	0	1	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	t0020	2656	2	0	0	2	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	t0021	2656	2	0	0	2	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	t0022	2656	2	2	0	0	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	t0023	2657	1	1	0	0	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	t0024	2656	1	1	0	0	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	t0025	2657	1	0	0	0	0	1	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	t0026	2657	1	1	0	0	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	t0027	2657	1	0	0	1	0	0	copy fasta	HSDL1	chr16	84117141	84150177
HSDL1_chr16_84117141_84150177	0/0	t0028	2656	1	0	0	1	0	0	copy fasta	HSDL1	chr16	84117141	84150177