Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ABHD16A_chr6_31681955_31708324	0/0	t0004	301	1	0	0	1	0	0	copy fasta	ABHD16A	chr6	31681955	31708324
ABHD16A_chr6_31681955_31708324	0/0	t0005	301	1	0	0	1	0	0	copy fasta	ABHD16A	chr6	31681955	31708324
ABHD16B_chr20_63856498_63867988	1/1	t0001	82	398	92	80	162	18	44	copy fasta	ABHD16B	chr20	63856498	63867988
ABHD17A_chr19_1871810_1890496	1/1	t0001	774	362	76	65	166	14	39	copy fasta	ABHD17A	chr19	1871810	1890496
ABHD17A_chr19_1871810_1890496	0/0	t0002	770	36	12	5	17	0	2	copy fasta	ABHD17A	chr19	1871810	1890496
ABHD17A_chr19_1871810_1890496	0/0	t0003	774	9	0	3	1	0	5	copy fasta	ABHD17A	chr19	1871810	1890496
ABHD17A_chr19_1871810_1890496	0/0	t0004	770	5	5	0	0	0	0	copy fasta	ABHD17A	chr19	1871810	1890496
ABHD17A_chr19_1871810_1890496	0/0	t0005	740	1	0	0	1	0	0	copy fasta	ABHD17A	chr19	1871810	1890496
ABHD17A_chr19_1871810_1890496	0/0	t0006	774	1	0	0	1	0	0	copy fasta	ABHD17A	chr19	1871810	1890496
ABHD17A_chr19_1871810_1890496	0/0	t0007	774	1	0	1	0	0	0	copy fasta	ABHD17A	chr19	1871810	1890496
ABHD17A_chr19_1871810_1890496	0/0	t0008	770	1	1	0	0	0	0	copy fasta	ABHD17A	chr19	1871810	1890496
ABHD17B_chr9_71860152_71916193	0/1	t0001	2199	157	43	41	48	12	12	copy fasta	ABHD17B	chr9	71860152	71916193
ABHD17B_chr9_71860152_71916193	0/0	t0002	2199	12	10	2	0	0	0	copy fasta	ABHD17B	chr9	71860152	71916193
ABHD17B_chr9_71860152_71916193	0/0	t0003	2199	3	3	0	0	0	0	copy fasta	ABHD17B	chr9	71860152	71916193
ABHD17B_chr9_71860152_71916193	0/0	t0004	2199	2	0	2	0	0	0	copy fasta	ABHD17B	chr9	71860152	71916193
ABHD17B_chr9_71860152_71916193	0/0	t0005	2199	2	2	0	0	0	0	copy fasta	ABHD17B	chr9	71860152	71916193
ABHD17B_chr9_71860152_71916193	1/0	t0006	2199	2	1	0	0	0	0	copy fasta	ABHD17B	chr9	71860152	71916193
ABHD17B_chr9_71860152_71916193	0/0	t0007	2199	2	2	0	0	0	0	copy fasta	ABHD17B	chr9	71860152	71916193
ABHD17B_chr9_71860152_71916193	0/0	t0008	2199	1	0	0	1	0	0	copy fasta	ABHD17B	chr9	71860152	71916193
ABHD17B_chr9_71860152_71916193	0/0	t0009	2199	1	0	1	0	0	0	copy fasta	ABHD17B	chr9	71860152	71916193
ABHD17B_chr9_71860152_71916193	0/0	t0010	2199	1	1	0	0	0	0	copy fasta	ABHD17B	chr9	71860152	71916193
ABHD17B_chr9_71860152_71916193	0/0	t0011	2199	1	0	0	1	0	0	copy fasta	ABHD17B	chr9	71860152	71916193
ABHD17B_chr9_71860152_71916193	0/0	t0012	2199	1	0	0	0	0	1	copy fasta	ABHD17B	chr9	71860152	71916193
ABHD17B_chr9_71860152_71916193	0/0	t0013	2199	1	0	0	0	0	1	copy fasta	ABHD17B	chr9	71860152	71916193
ABHD17C_chr15_80690310_80760621	1/0	t0001	1372	193	47	23	94	8	20	copy fasta	ABHD17C	chr15	80690310	80760621
ABHD17C_chr15_80690310_80760621	0/0	t0002	1372	44	20	12	2	1	9	copy fasta	ABHD17C	chr15	80690310	80760621
ABHD17C_chr15_80690310_80760621	0/1	t0003	1372	36	10	10	7	1	7	copy fasta	ABHD17C	chr15	80690310	80760621
ABHD17C_chr15_80690310_80760621	0/0	t0004	1372	35	0	5	21	2	7	copy fasta	ABHD17C	chr15	80690310	80760621
ABHD17C_chr15_80690310_80760621	0/0	t0005	1372	18	0	3	14	0	1	copy fasta	ABHD17C	chr15	80690310	80760621
ABHD17C_chr15_80690310_80760621	0/0	t0006	1372	15	13	2	0	0	0	copy fasta	ABHD17C	chr15	80690310	80760621
ABHD17C_chr15_80690310_80760621	0/0	t0007	1372	5	1	0	4	0	0	copy fasta	ABHD17C	chr15	80690310	80760621
ABHD17C_chr15_80690310_80760621	0/0	t0008	1372	5	0	4	0	1	0	copy fasta	ABHD17C	chr15	80690310	80760621
ABHD17C_chr15_80690310_80760621	0/0	t0009	1372	4	1	1	0	1	1	copy fasta	ABHD17C	chr15	80690310	80760621
ABHD17C_chr15_80690310_80760621	0/0	t0010	1372	2	0	0	2	0	0	copy fasta	ABHD17C	chr15	80690310	80760621
ABHD17C_chr15_80690310_80760621	0/0	t0011	1372	1	1	0	0	0	0	copy fasta	ABHD17C	chr15	80690310	80760621
ABHD17C_chr15_80690310_80760621	0/0	t0012	1372	1	0	0	0	0	1	copy fasta	ABHD17C	chr15	80690310	80760621
ABHD17C_chr15_80690310_80760621	0/0	t0013	1372	1	1	0	0	0	0	copy fasta	ABHD17C	chr15	80690310	80760621
ABHD18_chr4_127960406_128044953	0/0	t0001	4679	33	0	5	28	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0002	4345	27	1	5	14	2	5	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	1/0	t0003	4359	24	9	1	11	0	2	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0004	4353	18	3	6	7	0	2	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0005	4361	17	1	1	15	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0006	4355	13	5	1	7	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0007	4357	12	1	0	8	1	2	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0008	4363	12	2	1	7	1	1	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0009	4355	10	0	0	5	2	3	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0010	4357	9	2	2	2	0	3	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0011	4353	8	2	1	3	2	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0012	4359	7	2	4	1	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	t0013	4347	6	0	0	4	1	1	copy fasta	ABHD18	chr4	127960406	128044953