Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANKLE2_chr12_132720503_132766832	0/0	t0017	1774	1	0	0	1	0	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	t0018	1774	1	1	0	0	0	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	t0019	1774	1	0	0	0	0	1	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	t0020	1774	1	0	0	0	0	1	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	t0021	1774	1	0	0	1	0	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKLE2_chr12_132720503_132766832	0/0	t0022	1774	1	0	0	1	0	0	copy fasta	ANKLE2	chr12	132720503	132766832
ANKMY1_chr2_240474422_240562988	1/1	t0001	313	299	71	74	98	16	38	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	t0002	313	9	9	0	0	0	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	t0003	313	7	7	0	0	0	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	t0004	313	4	4	0	0	0	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY1_chr2_240474422_240562988	0/0	t0005	313	1	1	0	0	0	0	copy fasta	ANKMY1	chr2	240474422	240562988
ANKMY2_chr7_16594779_16650754	0/0	t0001	1164	120	19	21	68	0	12	copy fasta	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/1	t0002	1164	115	16	22	46	8	22	copy fasta	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	1/0	t0003	1164	74	14	11	39	5	4	copy fasta	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	t0004	1164	66	27	12	23	1	3	copy fasta	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	t0005	1164	8	7	1	0	0	0	copy fasta	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	t0006	1164	5	5	0	0	0	0	copy fasta	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	t0007	1164	2	2	0	0	0	0	copy fasta	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	t0008	1164	2	0	2	0	0	0	copy fasta	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	t0009	1164	2	2	0	0	0	0	copy fasta	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	t0010	1164	1	0	1	0	0	0	copy fasta	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	t0011	1164	1	1	0	0	0	0	copy fasta	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	t0012	1164	1	1	0	0	0	0	copy fasta	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	t0013	1164	1	0	0	0	0	1	copy fasta	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	t0014	1164	1	0	0	1	0	0	copy fasta	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	t0015	1164	1	0	1	0	0	0	copy fasta	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	t0016	1164	1	0	1	0	0	0	copy fasta	ANKMY2	chr7	16594779	16650754
ANKMY2_chr7_16594779_16650754	0/0	t0017	1164	1	0	0	1	0	0	copy fasta	ANKMY2	chr7	16594779	16650754
ANKRA2_chr5_73547190_73570639	0/1	t0001	1220	166	12	34	94	4	21	copy fasta	ANKRA2	chr5	73547190	73570639
ANKRA2_chr5_73547190_73570639	1/0	t0002	1220	91	20	21	31	4	14	copy fasta	ANKRA2	chr5	73547190	73570639
ANKRA2_chr5_73547190_73570639	0/0	t0003	1220	49	20	3	19	3	4	copy fasta	ANKRA2	chr5	73547190	73570639
ANKRA2_chr5_73547190_73570639	0/0	t0004	1220	35	4	14	11	4	2	copy fasta	ANKRA2	chr5	73547190	73570639
ANKRA2_chr5_73547190_73570639	0/0	t0005	1220	16	14	2	0	0	0	copy fasta	ANKRA2	chr5	73547190	73570639
ANKRA2_chr5_73547190_73570639	0/0	t0006	1220	15	12	3	0	0	0	copy fasta	ANKRA2	chr5	73547190	73570639
ANKRA2_chr5_73547190_73570639	0/0	t0007	1217	7	7	0	0	0	0	copy fasta	ANKRA2	chr5	73547190	73570639
ANKRA2_chr5_73547190_73570639	0/0	t0008	1220	2	0	0	2	0	0	copy fasta	ANKRA2	chr5	73547190	73570639
ANKRA2_chr5_73547190_73570639	0/0	t0009	1220	2	2	0	0	0	0	copy fasta	ANKRA2	chr5	73547190	73570639
ANKRA2_chr5_73547190_73570639	0/0	t0010	1220	1	0	1	0	0	0	copy fasta	ANKRA2	chr5	73547190	73570639
ANKRA2_chr5_73547190_73570639	0/0	t0011	1220	1	0	0	1	0	0	copy fasta	ANKRA2	chr5	73547190	73570639
ANKRA2_chr5_73547190_73570639	0/0	t0012	1220	1	0	0	1	0	0	copy fasta	ANKRA2	chr5	73547190	73570639
ANKRA2_chr5_73547190_73570639	0/0	t0013	1220	1	1	0	0	0	0	copy fasta	ANKRA2	chr5	73547190	73570639
ANKRA2_chr5_73547190_73570639	0/0	t0014	1220	1	0	1	0	0	0	copy fasta	ANKRA2	chr5	73547190	73570639
ANKRA2_chr5_73547190_73570639	0/0	t0015	1220	1	0	0	1	0	0	copy fasta	ANKRA2	chr5	73547190	73570639
ANKRA2_chr5_73547190_73570639	0/0	t0016	1220	1	0	1	0	0	0	copy fasta	ANKRA2	chr5	73547190	73570639
ANKRA2_chr5_73547190_73570639	0/0	t0017	1220	1	0	0	0	1	0	copy fasta	ANKRA2	chr5	73547190	73570639
ANKRA2_chr5_73547190_73570639	0/0	t0018	1220	1	0	0	0	0	1	copy fasta	ANKRA2	chr5	73547190	73570639
ANKRD10_chr13_110873540_110920069	0/0	t0001	1233	223	54	44	91	9	25	copy fasta	ANKRD10	chr13	110873540	110920069
ANKRD10_chr13_110873540_110920069	0/0	t0002	1233	62	17	5	30	0	10	copy fasta	ANKRD10	chr13	110873540	110920069
ANKRD10_chr13_110873540_110920069	0/0	t0003	1233	45	2	24	1	6	12	copy fasta	ANKRD10	chr13	110873540	110920069
ANKRD10_chr13_110873540_110920069	1/0	t0004	1233	12	11	0	0	0	0	copy fasta	ANKRD10	chr13	110873540	110920069