JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HSPA12A_chr10_116666192_116747566	0/0	t0008	3687	6	5	1	0	0	0	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12A_chr10_116666192_116747566	0/0	t0009	3687	4	2	0	2	0	0	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12A_chr10_116666192_116747566	0/0	t0010	3687	3	0	2	1	0	0	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12A_chr10_116666192_116747566	0/0	t0011	3687	2	2	0	0	0	0	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12A_chr10_116666192_116747566	0/0	t0012	3687	2	0	0	2	0	0	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12A_chr10_116666192_116747566	0/0	t0013	3687	2	2	0	0	0	0	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12A_chr10_116666192_116747566	0/0	t0014	3687	2	0	0	0	0	2	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12A_chr10_116666192_116747566	0/0	t0015	3687	1	0	0	1	0	0	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12A_chr10_116666192_116747566	0/0	t0016	3687	1	0	0	1	0	0	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12A_chr10_116666192_116747566	0/0	t0017	3687	1	1	0	0	0	0	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12A_chr10_116666192_116747566	0/0	t0018	3687	1	1	0	0	0	0	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12A_chr10_116666192_116747566	0/0	t0019	3687	1	1	0	0	0	0	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12A_chr10_116666192_116747566	0/0	t0020	3687	1	0	0	1	0	0	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12A_chr10_116666192_116747566	0/0	t0021	3687	1	0	0	1	0	0	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12A_chr10_116666192_116747566	0/0	t0022	3687	1	0	0	0	0	1	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12A_chr10_116666192_116747566	0/0	t0023	3687	1	1	0	0	0	0	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12A_chr10_116666192_116747566	0/0	t0024	3687	1	1	0	0	0	0	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12A_chr10_116666192_116747566	0/0	t0025	3687	1	1	0	0	0	0	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12A_chr10_116666192_116747566	0/0	t0026	3687	1	0	1	0	0	0	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12A_chr10_116666192_116747566	0/0	t0027	3687	1	0	0	0	1	0	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12A_chr10_116666192_116747566	0/0	t0028	3687	1	1	0	0	0	0	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12A_chr10_116666192_116747566	0/0	t0029	3687	1	0	0	1	0	0	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12A_chr10_116666192_116747566	0/0	t0030	3687	1	1	0	0	0	0	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12A_chr10_116666192_116747566	0/0	t0031	3687	1	0	0	1	0	0	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12A_chr10_116666192_116747566	0/0	t0032	3687	1	0	0	0	0	1	copy fasta	HSPA12A	chr10	116666192	116747566
HSPA12B_chr20_3727685_3758111	1/1	t0001	1073	296	46	48	154	13	33	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	t0002	1073	72	8	18	31	4	11	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	t0003	1071	25	25	0	0	0	0	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	t0004	1073	12	11	1	0	0	0	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	t0005	1073	5	0	4	0	0	1	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	t0006	1071	5	0	0	1	1	3	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	t0007	1062	1	1	0	0	0	0	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	t0008	1071	1	1	0	0	0	0	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	t0009	1073	1	0	0	1	0	0	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	t0010	1073	1	1	0	0	0	0	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	t0011	1073	1	0	0	0	0	1	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	t0012	1073	1	0	1	0	0	0	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	t0013	1073	1	1	0	0	0	0	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	t0014	1073	1	0	0	0	0	1	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA12B_chr20_3727685_3758111	0/0	t0015	1073	1	0	0	1	0	0	copy fasta	HSPA12B	chr20	3727685	3758111
HSPA13_chr21_14366115_14388146	0/0	t0001	2530	133	20	25	62	4	22	copy fasta	HSPA13	chr21	14366115	14388146
HSPA13_chr21_14366115_14388146	1/1	t0002	2530	110	2	21	69	2	14	copy fasta	HSPA13	chr21	14366115	14388146
HSPA13_chr21_14366115_14388146	0/0	t0003	2530	46	14	5	24	1	2	copy fasta	HSPA13	chr21	14366115	14388146
HSPA13_chr21_14366115_14388146	0/0	t0004	2529	31	29	2	0	0	0	copy fasta	HSPA13	chr21	14366115	14388146
HSPA13_chr21_14366115_14388146	0/0	t0005	2529	17	5	0	12	0	0	copy fasta	HSPA13	chr21	14366115	14388146
HSPA13_chr21_14366115_14388146	0/0	t0006	2530	13	2	2	5	2	2	copy fasta	HSPA13	chr21	14366115	14388146
HSPA13_chr21_14366115_14388146	0/0	t0007	2530	13	0	3	7	0	3	copy fasta	HSPA13	chr21	14366115	14388146
HSPA13_chr21_14366115_14388146	0/0	t0008	2530	11	8	2	0	0	1	copy fasta	HSPA13	chr21	14366115	14388146
HSPA13_chr21_14366115_14388146	0/0	t0009	2529	8	7	1	0	0	0	copy fasta	HSPA13	chr21	14366115	14388146
HSPA13_chr21_14366115_14388146	0/0	t0010	2530	6	0	3	0	3	0	copy fasta	HSPA13	chr21	14366115	14388146