JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HSPA13_chr21_14366115_14388146	0/0	t0011	2531	4	2	2	0	0	0	copy fasta	HSPA13	chr21	14366115	14388146
HSPA13_chr21_14366115_14388146	0/0	t0012	2530	3	2	1	0	0	0	copy fasta	HSPA13	chr21	14366115	14388146
HSPA13_chr21_14366115_14388146	0/0	t0013	2530	2	2	0	0	0	0	copy fasta	HSPA13	chr21	14366115	14388146
HSPA13_chr21_14366115_14388146	0/0	t0014	2530	2	2	0	0	0	0	copy fasta	HSPA13	chr21	14366115	14388146
HSPA13_chr21_14366115_14388146	0/0	t0015	2530	2	2	0	0	0	0	copy fasta	HSPA13	chr21	14366115	14388146
HSPA13_chr21_14366115_14388146	0/0	t0016	2530	1	0	0	1	0	0	copy fasta	HSPA13	chr21	14366115	14388146
HSPA13_chr21_14366115_14388146	0/0	t0017	2530	1	0	0	1	0	0	copy fasta	HSPA13	chr21	14366115	14388146
HSPA13_chr21_14366115_14388146	0/0	t0018	2530	1	0	0	1	0	0	copy fasta	HSPA13	chr21	14366115	14388146
HSPA13_chr21_14366115_14388146	0/0	t0019	2530	1	0	0	0	0	1	copy fasta	HSPA13	chr21	14366115	14388146
HSPA13_chr21_14366115_14388146	0/0	t0020	2530	1	0	1	0	0	0	copy fasta	HSPA13	chr21	14366115	14388146
HSPA13_chr21_14366115_14388146	0/0	t0021	2530	1	0	0	0	0	1	copy fasta	HSPA13	chr21	14366115	14388146
HSPA13_chr21_14366115_14388146	0/0	t0022	2529	1	1	0	0	0	0	copy fasta	HSPA13	chr21	14366115	14388146
HSPA14_chr10_14833306_14876741	1/1	t0001	233	374	94	58	172	8	40	copy fasta	HSPA14	chr10	14833306	14876741
HSPA1A_chr6_31810543_31822942	0/1	t0001	475	244	19	49	133	12	30	copy fasta	HSPA1A	chr6	31810543	31822942
HSPA1A_chr6_31810543_31822942	0/0	t0002	475	145	65	33	24	6	17	copy fasta	HSPA1A	chr6	31810543	31822942
HSPA1A_chr6_31810543_31822942	0/0	t0003	474	12	0	0	12	0	0	copy fasta	HSPA1A	chr6	31810543	31822942
HSPA1A_chr6_31810543_31822942	0/0	t0004	475	10	4	4	2	0	0	copy fasta	HSPA1A	chr6	31810543	31822942
HSPA1A_chr6_31810543_31822942	0/0	t0005	475	3	0	0	2	0	1	copy fasta	HSPA1A	chr6	31810543	31822942
HSPA1A_chr6_31810543_31822942	0/0	t0006	475	2	2	0	0	0	0	copy fasta	HSPA1A	chr6	31810543	31822942
HSPA1A_chr6_31810543_31822942	0/0	t0007	475	1	1	0	0	0	0	copy fasta	HSPA1A	chr6	31810543	31822942
HSPA1A_chr6_31810543_31822942	0/0	t0008	475	1	1	0	0	0	0	copy fasta	HSPA1A	chr6	31810543	31822942
HSPA1A_chr6_31810543_31822942	0/0	t0009	209	1	0	0	1	0	0	copy fasta	HSPA1A	chr6	31810543	31822942
HSPA1B_chr6_31822738_31835254	0/0	t0001	590	76	9	17	35	7	8	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	t0002	595	49	8	18	21	0	2	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	t0003	592	40	3	4	26	1	6	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/1	t0004	591	39	8	8	14	1	7	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	t0005	596	36	15	4	11	0	6	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	t0006	586	24	0	2	18	0	4	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	t0007	595	20	5	3	11	0	1	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	t0008	595	17	6	4	4	3	0	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	t0009	597	17	9	4	3	0	1	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	t0010	589	16	11	1	4	0	0	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	t0011	596	9	2	1	3	0	3	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	t0012	596	8	5	0	2	1	0	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	t0013	590	7	0	3	4	0	0	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	t0014	593	7	0	1	3	0	3	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	t0015	587	6	0	1	3	0	2	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	t0016	591	5	0	0	5	0	0	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	t0017	591	5	1	3	0	0	1	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	t0018	596	4	4	0	0	0	0	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	t0019	597	4	2	0	2	0	0	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	t0020	596	4	0	3	0	1	0	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	t0021	586	4	0	2	0	2	0	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	t0022	597	3	1	1	1	0	0	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	t0023	597	3	3	0	0	0	0	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	t0024	595	2	0	2	0	0	0	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	t0025	593	2	2	0	0	0	0	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	t0026	590	2	0	0	2	0	0	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	t0027	592	1	0	0	0	1	0	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	t0028	594	1	1	0	0	0	0	copy fasta	HSPA1B	chr6	31822738	31835254