JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HSPA1B_chr6_31822738_31835254	0/0	t0029	592	1	0	0	1	0	0	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	t0030	590	1	0	0	1	0	0	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	t0031	590	1	0	0	0	1	0	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	t0032	596	1	1	0	0	0	0	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	t0033	596	1	0	0	0	0	1	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	t0034	594	1	0	0	0	0	1	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	t0035	594	1	0	1	0	0	0	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	t0036	595	1	1	0	0	0	0	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	t0037	595	1	1	0	0	0	0	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1B_chr6_31822738_31835254	0/0	t0038	596	1	0	1	0	0	0	copy fasta	HSPA1B	chr6	31822738	31835254
HSPA1L_chr6_31804619_31820283	0/1	t0001	837	342	55	70	157	17	42	copy fasta	HSPA1L	chr6	31804619	31820283
HSPA1L_chr6_31804619_31820283	0/0	t0002	836	46	16	5	22	1	2	copy fasta	HSPA1L	chr6	31804619	31820283
HSPA1L_chr6_31804619_31820283	0/0	t0003	837	19	11	2	5	0	1	copy fasta	HSPA1L	chr6	31804619	31820283
HSPA1L_chr6_31804619_31820283	0/0	t0004	836	10	4	4	2	0	0	copy fasta	HSPA1L	chr6	31804619	31820283
HSPA1L_chr6_31804619_31820283	0/0	t0005	837	4	4	0	0	0	0	copy fasta	HSPA1L	chr6	31804619	31820283
HSPA1L_chr6_31804619_31820283	0/0	t0006	836	2	0	2	0	0	0	copy fasta	HSPA1L	chr6	31804619	31820283
HSPA1L_chr6_31804619_31820283	0/0	t0007	836	2	0	0	2	0	0	copy fasta	HSPA1L	chr6	31804619	31820283
HSPA1L_chr6_31804619_31820283	0/0	t0008	837	1	0	0	0	0	1	copy fasta	HSPA1L	chr6	31804619	31820283
HSPA1L_chr6_31804619_31820283	0/0	t0009	837	1	0	1	0	0	0	copy fasta	HSPA1L	chr6	31804619	31820283
HSPA1L_chr6_31804619_31820283	0/0	t0010	837	1	0	0	1	0	0	copy fasta	HSPA1L	chr6	31804619	31820283
HSPA1L_chr6_31804619_31820283	0/0	t0011	837	1	0	0	1	0	0	copy fasta	HSPA1L	chr6	31804619	31820283
HSPA2_chr14_64535741_64548237	0/0	t0001	579	240	37	43	121	12	27	copy fasta	HSPA2	chr14	64535741	64548237
HSPA2_chr14_64535741_64548237	1/1	t0002	578	127	52	27	28	1	17	copy fasta	HSPA2	chr14	64535741	64548237
HSPA2_chr14_64535741_64548237	0/0	t0003	579	6	0	0	6	0	0	copy fasta	HSPA2	chr14	64535741	64548237
HSPA2_chr14_64535741_64548237	0/0	t0004	579	1	0	0	0	1	0	copy fasta	HSPA2	chr14	64535741	64548237
HSPA2_chr14_64535741_64548237	0/0	t0005	579	1	0	0	1	0	0	copy fasta	HSPA2	chr14	64535741	64548237
HSPA2_chr14_64535741_64548237	0/0	t0006	578	1	1	0	0	0	0	copy fasta	HSPA2	chr14	64535741	64548237
HSPA4L_chr4_127777322_127845733	0/1	t0001	8090	164	40	29	65	9	20	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0002	8090	57	0	7	50	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0003	8091	12	0	0	12	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0004	8091	11	0	0	11	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0005	8090	8	8	0	0	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0006	8098	4	4	0	0	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0007	8091	4	0	0	4	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0008	8093	4	4	0	0	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0009	8095	4	0	0	4	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0010	8089	4	0	0	4	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0011	8090	3	3	0	0	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0012	8090	3	3	0	0	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0013	8090	3	2	1	0	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0014	8090	3	0	0	3	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0015	8090	3	2	1	0	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0016	8090	3	0	3	0	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0017	8090	2	2	0	0	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0018	8094	2	2	0	0	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0019	8091	2	0	0	2	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0020	8090	2	0	1	0	1	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0021	8090	2	0	0	0	0	2	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0022	8089	2	0	0	2	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0023	8090	2	0	2	0	0	0	copy fasta	HSPA4L	chr4	127777322	127845733