JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HSPA4L_chr4_127777322_127845733	0/0	t0024	8090	2	2	0	0	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0025	8091	1	1	0	0	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0026	8090	1	1	0	0	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0027	8111	1	0	1	0	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0028	8090	1	1	0	0	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0029	8090	1	0	1	0	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0030	8090	1	0	1	0	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0031	8095	1	1	0	0	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0032	8090	1	0	1	0	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0033	8090	1	0	0	1	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0034	8090	1	0	0	1	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0035	8090	1	0	0	1	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0036	8090	1	1	0	0	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0037	8092	1	1	0	0	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0038	8091	1	0	0	1	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0039	8092	1	0	0	0	0	1	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0040	8090	1	0	0	1	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0041	8090	1	0	0	0	0	1	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	1/0	t0042	8089	1	0	0	0	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0043	8090	1	1	0	0	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0044	8119	1	0	1	0	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0045	8090	1	0	0	1	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0046	8090	1	1	0	0	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0047	8090	1	0	1	0	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0048	8090	1	0	0	1	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0049	8088	1	0	0	1	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0050	8090	1	1	0	0	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0051	8090	1	1	0	0	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0052	8089	1	0	0	1	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0053	8090	1	1	0	0	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0054	8090	1	1	0	0	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0055	8109	1	1	0	0	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0056	8128	1	1	0	0	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0057	8092	1	0	0	1	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4L_chr4_127777322_127845733	0/0	t0058	8090	1	0	0	1	0	0	copy fasta	HSPA4L	chr4	127777322	127845733
HSPA4_chr5_133047013_133111449	1/1	t0001	2252	42	5	9	15	3	8	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0002	2239	37	7	9	12	3	6	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0003	2241	36	5	1	30	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0004	2253	27	4	9	11	1	2	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0005	2245	23	1	5	15	0	2	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0006	2246	17	1	7	6	1	2	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0007	2254	16	1	3	10	1	1	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0008	2252	14	10	1	1	0	2	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0009	2251	11	7	3	0	0	1	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0010	2255	10	3	0	5	1	1	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0011	2240	10	5	2	3	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0012	2250	9	2	3	1	0	3	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0013	2251	8	1	1	4	1	1	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0014	2242	6	0	1	5	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0015	2249	5	1	3	1	0	0	copy fasta	HSPA4	chr5	133047013	133111449