JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HSPA4_chr5_133047013_133111449	0/0	t0016	2247	4	0	0	2	0	2	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0017	2254	4	2	2	0	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0018	2254	4	0	0	3	1	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0019	2234	3	1	0	2	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0020	2253	3	2	1	0	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0021	2242	3	3	0	0	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0022	2253	2	2	0	0	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0023	2241	2	0	0	2	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0024	2232	2	1	1	0	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0025	2239	2	2	0	0	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0026	2257	2	0	1	0	0	1	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0027	2246	2	0	0	2	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0028	2251	2	0	2	0	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0029	2239	2	0	0	2	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0030	2240	2	0	2	0	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0031	2236	2	0	2	0	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0032	2237	1	1	0	0	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0033	2238	1	1	0	0	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0034	2238	1	0	0	1	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0035	2254	1	0	0	1	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0036	2246	1	0	0	1	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0037	2249	1	0	0	1	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0038	2236	1	0	0	0	0	1	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0039	2239	1	0	0	0	0	1	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0040	2240	1	0	0	1	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0041	2252	1	0	0	1	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0042	2247	1	0	0	1	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0043	2245	1	0	0	1	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0044	2253	1	0	0	1	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0045	2254	1	0	0	1	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0046	2258	1	0	1	0	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0047	2264	1	0	0	1	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0048	2267	1	0	0	1	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0049	2231	1	1	0	0	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0050	2242	1	0	0	1	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0051	2240	1	1	0	0	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0052	2241	1	0	0	1	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0053	2239	1	1	0	0	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0054	2240	1	1	0	0	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0055	2256	1	1	0	0	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0056	2254	1	1	0	0	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0057	2240	1	0	0	1	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0058	2241	1	0	0	1	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0059	2245	1	0	0	1	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0060	2247	1	0	0	1	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0061	2245	1	0	0	1	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0062	2253	1	0	0	1	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0063	2241	1	1	0	0	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0064	2253	1	1	0	0	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0065	2255	1	1	0	0	0	0	copy fasta	HSPA4	chr5	133047013	133111449