JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HSPA4_chr5_133047013_133111449	0/0	t0066	2250	1	1	0	0	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0067	2251	1	1	0	0	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0068	2239	1	1	0	0	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0069	2239	1	1	0	0	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0070	2241	1	1	0	0	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0071	2243	1	1	0	0	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0072	2247	1	1	0	0	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0073	2241	1	0	0	0	1	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0074	2240	1	1	0	0	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0075	2239	1	0	0	0	1	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0076	2240	1	0	0	1	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0077	2238	1	1	0	0	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0078	2237	1	0	0	1	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0079	2235	1	0	1	0	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0080	2240	1	0	0	0	0	1	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0081	2239	1	0	0	0	0	1	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0082	2243	1	1	0	0	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA4_chr5_133047013_133111449	0/0	t0083	2239	1	1	0	0	0	0	copy fasta	HSPA4	chr5	133047013	133111449
HSPA5_chr9_125229853_125246343	0/1	t0001	1958	132	42	30	37	10	12	copy fasta	HSPA5	chr9	125229853	125246343
HSPA5_chr9_125229853_125246343	1/0	t0002	1957	96	6	15	55	6	13	copy fasta	HSPA5	chr9	125229853	125246343
HSPA5_chr9_125229853_125246343	0/0	t0003	1959	51	0	1	42	0	8	copy fasta	HSPA5	chr9	125229853	125246343
HSPA5_chr9_125229853_125246343	0/0	t0004	1958	47	14	3	22	2	6	copy fasta	HSPA5	chr9	125229853	125246343
HSPA5_chr9_125229853_125246343	0/0	t0005	1958	31	0	5	25	0	1	copy fasta	HSPA5	chr9	125229853	125246343
HSPA5_chr9_125229853_125246343	0/0	t0006	1958	15	13	2	0	0	0	copy fasta	HSPA5	chr9	125229853	125246343
HSPA5_chr9_125229853_125246343	0/0	t0007	1958	8	7	1	0	0	0	copy fasta	HSPA5	chr9	125229853	125246343
HSPA5_chr9_125229853_125246343	0/0	t0008	1957	6	4	1	1	0	0	copy fasta	HSPA5	chr9	125229853	125246343
HSPA5_chr9_125229853_125246343	0/0	t0009	1958	3	3	0	0	0	0	copy fasta	HSPA5	chr9	125229853	125246343
HSPA5_chr9_125229853_125246343	0/0	t0010	1960	2	0	0	2	0	0	copy fasta	HSPA5	chr9	125229853	125246343
HSPA5_chr9_125229853_125246343	0/0	t0011	1959	2	0	0	2	0	0	copy fasta	HSPA5	chr9	125229853	125246343
HSPA5_chr9_125229853_125246343	0/0	t0012	1958	1	0	1	0	0	0	copy fasta	HSPA5	chr9	125229853	125246343
HSPA5_chr9_125229853_125246343	0/0	t0013	1959	1	0	0	1	0	0	copy fasta	HSPA5	chr9	125229853	125246343
HSPA5_chr9_125229853_125246343	0/0	t0014	1946	1	0	0	1	0	0	copy fasta	HSPA5	chr9	125229853	125246343
HSPA5_chr9_125229853_125246343	0/0	t0015	1958	1	0	0	0	0	1	copy fasta	HSPA5	chr9	125229853	125246343
HSPA5_chr9_125229853_125246343	0/0	t0016	1958	1	0	0	1	0	0	copy fasta	HSPA5	chr9	125229853	125246343
HSPA5_chr9_125229853_125246343	0/0	t0017	1959	1	0	0	1	0	0	copy fasta	HSPA5	chr9	125229853	125246343
HSPA5_chr9_125229853_125246343	0/0	t0018	1959	1	0	0	0	0	1	copy fasta	HSPA5	chr9	125229853	125246343
HSPA5_chr9_125229853_125246343	0/0	t0019	1957	1	1	0	0	0	0	copy fasta	HSPA5	chr9	125229853	125246343
HSPA5_chr9_125229853_125246343	0/0	t0020	1958	1	1	0	0	0	0	copy fasta	HSPA5	chr9	125229853	125246343
HSPA5_chr9_125229853_125246343	0/0	t0021	1957	1	0	1	0	0	0	copy fasta	HSPA5	chr9	125229853	125246343
HSPA5_chr9_125229853_125246343	0/0	t0022	1958	1	1	0	0	0	0	copy fasta	HSPA5	chr9	125229853	125246343
HSPA6_chr1_161519540_161531894	1/0	t0001	424	275	54	43	136	10	31	copy fasta	HSPA6	chr1	161519540	161531894
HSPA6_chr1_161519540_161531894	0/1	t0002	424	169	33	26	91	6	12	copy fasta	HSPA6	chr1	161519540	161531894
HSPA6_chr1_161519540_161531894	0/0	t0003	424	7	7	0	0	0	0	copy fasta	HSPA6	chr1	161519540	161531894
HSPA6_chr1_161519540_161531894	0/0	t0004	424	2	0	0	0	0	2	copy fasta	HSPA6	chr1	161519540	161531894
HSPA6_chr1_161519540_161531894	0/0	t0005	434	1	0	1	0	0	0	copy fasta	HSPA6	chr1	161519540	161531894
HSPA6_chr1_161519540_161531894	0/0	t0006	424	1	0	0	1	0	0	copy fasta	HSPA6	chr1	161519540	161531894
HSPA6_chr1_161519540_161531894	0/0	t0007	424	1	0	0	0	0	1	copy fasta	HSPA6	chr1	161519540	161531894
HSPA8_chr11_123052489_123067136	1/0	t0001	324	207	32	51	78	12	33	copy fasta	HSPA8	chr11	123052489	123067136
HSPA8_chr11_123052489_123067136	0/0	t0002	324	109	30	6	63	1	9	copy fasta	HSPA8	chr11	123052489	123067136
HSPA8_chr11_123052489_123067136	0/1	t0003	324	54	12	10	28	1	2	copy fasta	HSPA8	chr11	123052489	123067136