JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HSPA8_chr11_123052489_123067136	0/0	t0004	324	48	15	11	16	2	4	copy fasta	HSPA8	chr11	123052489	123067136
HSPA8_chr11_123052489_123067136	0/0	t0005	324	1	0	0	1	0	0	copy fasta	HSPA8	chr11	123052489	123067136
HSPA8_chr11_123052489_123067136	0/0	t0006	324	1	1	0	0	0	0	copy fasta	HSPA8	chr11	123052489	123067136
HSPA8_chr11_123052489_123067136	0/0	t0007	324	1	1	0	0	0	0	copy fasta	HSPA8	chr11	123052489	123067136
HSPA8_chr11_123052489_123067136	0/0	t0008	324	1	1	0	0	0	0	copy fasta	HSPA8	chr11	123052489	123067136
HSPA8_chr11_123052489_123067136	0/0	t0009	324	1	0	0	1	0	0	copy fasta	HSPA8	chr11	123052489	123067136
HSPA8_chr11_123052489_123067136	0/0	t0010	324	1	0	0	1	0	0	copy fasta	HSPA8	chr11	123052489	123067136
HSPA9_chr5_138548756_138580401	0/1	t0001	2365	133	37	26	44	5	20	copy fasta	HSPA9	chr5	138548756	138580401
HSPA9_chr5_138548756_138580401	1/0	t0002	2365	110	23	34	32	5	15	copy fasta	HSPA9	chr5	138548756	138580401
HSPA9_chr5_138548756_138580401	0/0	t0003	2342	8	7	1	0	0	0	copy fasta	HSPA9	chr5	138548756	138580401
HSPA9_chr5_138548756_138580401	0/0	t0004	2365	6	3	0	0	0	3	copy fasta	HSPA9	chr5	138548756	138580401
HSPA9_chr5_138548756_138580401	0/0	t0005	2365	6	6	0	0	0	0	copy fasta	HSPA9	chr5	138548756	138580401
HSPA9_chr5_138548756_138580401	0/0	t0006	2365	5	4	1	0	0	0	copy fasta	HSPA9	chr5	138548756	138580401
HSPA9_chr5_138548756_138580401	0/0	t0007	2365	5	0	0	5	0	0	copy fasta	HSPA9	chr5	138548756	138580401
HSPA9_chr5_138548756_138580401	0/0	t0008	2365	4	2	0	2	0	0	copy fasta	HSPA9	chr5	138548756	138580401
HSPA9_chr5_138548756_138580401	0/0	t0009	2364	4	0	0	4	0	0	copy fasta	HSPA9	chr5	138548756	138580401
HSPA9_chr5_138548756_138580401	0/0	t0010	2342	3	3	0	0	0	0	copy fasta	HSPA9	chr5	138548756	138580401
HSPA9_chr5_138548756_138580401	0/0	t0011	2365	2	2	0	0	0	0	copy fasta	HSPA9	chr5	138548756	138580401
HSPA9_chr5_138548756_138580401	0/0	t0012	2365	2	2	0	0	0	0	copy fasta	HSPA9	chr5	138548756	138580401
HSPA9_chr5_138548756_138580401	0/0	t0013	2365	2	0	1	0	0	1	copy fasta	HSPA9	chr5	138548756	138580401
HSPA9_chr5_138548756_138580401	0/0	t0014	2365	2	0	1	0	0	1	copy fasta	HSPA9	chr5	138548756	138580401
HSPA9_chr5_138548756_138580401	0/0	t0015	2341	1	1	0	0	0	0	copy fasta	HSPA9	chr5	138548756	138580401
HSPA9_chr5_138548756_138580401	0/0	t0016	2365	1	0	1	0	0	0	copy fasta	HSPA9	chr5	138548756	138580401
HSPA9_chr5_138548756_138580401	0/0	t0017	2364	1	0	0	1	0	0	copy fasta	HSPA9	chr5	138548756	138580401
HSPA9_chr5_138548756_138580401	0/0	t0018	2365	1	0	1	0	0	0	copy fasta	HSPA9	chr5	138548756	138580401
HSPA9_chr5_138548756_138580401	0/0	t0019	2365	1	0	0	1	0	0	copy fasta	HSPA9	chr5	138548756	138580401
HSPA9_chr5_138548756_138580401	0/0	t0020	2365	1	0	0	1	0	0	copy fasta	HSPA9	chr5	138548756	138580401
HSPA9_chr5_138548756_138580401	0/0	t0021	2365	1	0	0	1	0	0	copy fasta	HSPA9	chr5	138548756	138580401
HSPA9_chr5_138548756_138580401	0/0	t0022	2365	1	0	0	1	0	0	copy fasta	HSPA9	chr5	138548756	138580401
HSPA9_chr5_138548756_138580401	0/0	t0023	2342	1	1	0	0	0	0	copy fasta	HSPA9	chr5	138548756	138580401
HSPA9_chr5_138548756_138580401	0/0	t0024	2365	1	1	0	0	0	0	copy fasta	HSPA9	chr5	138548756	138580401
HSPB1_chr7_76297673_76309292	0/0	t0001	160	399	87	69	187	16	40	copy fasta	HSPB1	chr7	76297673	76309292
HSPB1_chr7_76297673_76309292	0/0	t0002	160	10	6	2	0	0	2	copy fasta	HSPB1	chr7	76297673	76309292
HSPB1_chr7_76297673_76309292	0/0	t0003	160	6	5	1	0	0	0	copy fasta	HSPB1	chr7	76297673	76309292
HSPB1_chr7_76297673_76309292	0/0	t0004	156	3	0	0	3	0	0	copy fasta	HSPB1	chr7	76297673	76309292
HSPB2_chr11_111907734_111919093	1/1	t0001	295	390	91	75	170	8	44	copy fasta	HSPB2	chr11	111907734	111919093
HSPB2_chr11_111907734_111919093	0/0	t0002	295	3	0	3	0	0	0	copy fasta	HSPB2	chr11	111907734	111919093
HSPB2_chr11_111907734_111919093	0/0	t0003	295	1	1	0	0	0	0	copy fasta	HSPB2	chr11	111907734	111919093
HSPB3_chr5_54450699_54461377	1/1	t0001	227	462	94	80	220	18	48	copy fasta	HSPB3	chr5	54450699	54461377
HSPB6_chr19_35749566_35762029	1/0	t0001	978	355	83	54	164	13	40	copy fasta	HSPB6	chr19	35749566	35762029
HSPB6_chr19_35749566_35762029	0/1	t0002	978	52	10	18	16	1	6	copy fasta	HSPB6	chr19	35749566	35762029
HSPB6_chr19_35749566_35762029	0/0	t0003	978	2	2	0	0	0	0	copy fasta	HSPB6	chr19	35749566	35762029
HSPB6_chr19_35749566_35762029	0/0	t0004	978	2	1	1	0	0	0	copy fasta	HSPB6	chr19	35749566	35762029
HSPB6_chr19_35749566_35762029	0/0	t0005	978	1	0	0	1	0	0	copy fasta	HSPB6	chr19	35749566	35762029
HSPB6_chr19_35749566_35762029	0/0	t0006	978	1	0	1	0	0	0	copy fasta	HSPB6	chr19	35749566	35762029
HSPB6_chr19_35749566_35762029	0/0	t0007	978	1	0	0	1	0	0	copy fasta	HSPB6	chr19	35749566	35762029
HSPB7_chr1_16009029_16023043	0/0	t0001	1631	163	28	18	97	4	16	copy fasta	HSPB7	chr1	16009029	16023043
HSPB7_chr1_16009029_16023043	1/1	t0002	1632	72	14	31	3	7	15	copy fasta	HSPB7	chr1	16009029	16023043
HSPB7_chr1_16009029_16023043	0/0	t0003	1631	65	3	10	49	1	2	copy fasta	HSPB7	chr1	16009029	16023043
HSPB7_chr1_16009029_16023043	0/0	t0004	1631	28	5	2	8	3	10	copy fasta	HSPB7	chr1	16009029	16023043