JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HSPB7_chr1_16009029_16023043	0/0	t0005	1631	23	21	2	0	0	0	copy fasta	HSPB7	chr1	16009029	16023043
HSPB7_chr1_16009029_16023043	0/0	t0006	1631	12	4	5	2	0	1	copy fasta	HSPB7	chr1	16009029	16023043
HSPB7_chr1_16009029_16023043	0/0	t0007	1631	4	4	0	0	0	0	copy fasta	HSPB7	chr1	16009029	16023043
HSPB7_chr1_16009029_16023043	0/0	t0008	1631	4	4	0	0	0	0	copy fasta	HSPB7	chr1	16009029	16023043
HSPB7_chr1_16009029_16023043	0/0	t0009	1632	3	3	0	0	0	0	copy fasta	HSPB7	chr1	16009029	16023043
HSPB7_chr1_16009029_16023043	0/0	t0010	1631	2	2	0	0	0	0	copy fasta	HSPB7	chr1	16009029	16023043
HSPB7_chr1_16009029_16023043	0/0	t0011	1631	2	2	0	0	0	0	copy fasta	HSPB7	chr1	16009029	16023043
HSPB7_chr1_16009029_16023043	0/0	t0012	1631	1	0	1	0	0	0	copy fasta	HSPB7	chr1	16009029	16023043
HSPB7_chr1_16009029_16023043	0/0	t0013	1632	1	0	0	0	1	0	copy fasta	HSPB7	chr1	16009029	16023043
HSPB7_chr1_16009029_16023043	0/0	t0014	1632	1	1	0	0	0	0	copy fasta	HSPB7	chr1	16009029	16023043
HSPB7_chr1_16009029_16023043	0/0	t0015	1632	1	0	1	0	0	0	copy fasta	HSPB7	chr1	16009029	16023043
HSPB7_chr1_16009029_16023043	0/0	t0016	1631	1	1	0	0	0	0	copy fasta	HSPB7	chr1	16009029	16023043
HSPB7_chr1_16009029_16023043	0/0	t0017	1631	1	0	1	0	0	0	copy fasta	HSPB7	chr1	16009029	16023043
HSPB7_chr1_16009029_16023043	0/0	t0018	1631	1	0	0	1	0	0	copy fasta	HSPB7	chr1	16009029	16023043
HSPB7_chr1_16009029_16023043	0/0	t0019	1631	1	0	1	0	0	0	copy fasta	HSPB7	chr1	16009029	16023043
HSPB7_chr1_16009029_16023043	0/0	t0020	1631	1	0	0	1	0	0	copy fasta	HSPB7	chr1	16009029	16023043
HSPB7_chr1_16009029_16023043	0/0	t0021	1631	1	0	0	1	0	0	copy fasta	HSPB7	chr1	16009029	16023043
HSPB7_chr1_16009029_16023043	0/0	t0022	1631	1	1	0	0	0	0	copy fasta	HSPB7	chr1	16009029	16023043
HSPB7_chr1_16009029_16023043	0/0	t0023	1631	1	1	0	0	0	0	copy fasta	HSPB7	chr1	16009029	16023043
HSPB7_chr1_16009029_16023043	0/0	t0024	1631	1	1	0	0	0	0	copy fasta	HSPB7	chr1	16009029	16023043
HSPB7_chr1_16009029_16023043	0/0	t0025	1631	1	1	0	0	0	0	copy fasta	HSPB7	chr1	16009029	16023043
HSPB8_chr12_119173931_119199746	0/1	t0001	1274	132	41	39	38	7	6	copy fasta	HSPB8	chr12	119173931	119199746
HSPB8_chr12_119173931_119199746	1/0	t0002	1271	113	4	10	81	3	14	copy fasta	HSPB8	chr12	119173931	119199746
HSPB8_chr12_119173931_119199746	0/0	t0003	1265	57	3	18	29	1	6	copy fasta	HSPB8	chr12	119173931	119199746
HSPB8_chr12_119173931_119199746	0/0	t0004	1277	52	8	3	34	0	7	copy fasta	HSPB8	chr12	119173931	119199746
HSPB8_chr12_119173931_119199746	0/0	t0005	1265	17	15	0	2	0	0	copy fasta	HSPB8	chr12	119173931	119199746
HSPB8_chr12_119173931_119199746	0/0	t0006	1268	10	10	0	0	0	0	copy fasta	HSPB8	chr12	119173931	119199746
HSPB8_chr12_119173931_119199746	0/0	t0007	1258	7	5	2	0	0	0	copy fasta	HSPB8	chr12	119173931	119199746
HSPB8_chr12_119173931_119199746	0/0	t0008	1277	6	0	2	2	0	2	copy fasta	HSPB8	chr12	119173931	119199746
HSPB8_chr12_119173931_119199746	0/0	t0009	1280	6	0	0	6	0	0	copy fasta	HSPB8	chr12	119173931	119199746
HSPB8_chr12_119173931_119199746	0/0	t0010	1265	5	1	2	0	1	1	copy fasta	HSPB8	chr12	119173931	119199746
HSPB8_chr12_119173931_119199746	0/0	t0011	1265	3	3	0	0	0	0	copy fasta	HSPB8	chr12	119173931	119199746
HSPB8_chr12_119173931_119199746	0/0	t0012	1271	2	0	0	2	0	0	copy fasta	HSPB8	chr12	119173931	119199746
HSPB8_chr12_119173931_119199746	0/0	t0013	1274	2	0	2	0	0	0	copy fasta	HSPB8	chr12	119173931	119199746
HSPB8_chr12_119173931_119199746	0/0	t0014	1274	1	1	0	0	0	0	copy fasta	HSPB8	chr12	119173931	119199746
HSPB8_chr12_119173931_119199746	0/0	t0015	1271	1	0	0	1	0	0	copy fasta	HSPB8	chr12	119173931	119199746
HSPB8_chr12_119173931_119199746	0/0	t0016	1265	1	1	0	0	0	0	copy fasta	HSPB8	chr12	119173931	119199746
HSPB8_chr12_119173931_119199746	0/0	t0017	1274	1	1	0	0	0	0	copy fasta	HSPB8	chr12	119173931	119199746
HSPB8_chr12_119173931_119199746	0/0	t0018	1265	1	0	0	1	0	0	copy fasta	HSPB8	chr12	119173931	119199746
HSPB8_chr12_119173931_119199746	0/0	t0019	1277	1	1	0	0	0	0	copy fasta	HSPB8	chr12	119173931	119199746
HSPB9_chr17_42117804_42128352	1/1	t0001	70	334	90	62	122	18	40	copy fasta	HSPB9	chr17	42117804	42128352
HSPBAP1_chr3_122734999_122798831	1/0	t0001	498	139	24	22	70	4	18	copy fasta	HSPBAP1	chr3	122734999	122798831
HSPBAP1_chr3_122734999_122798831	0/0	t0002	498	139	28	33	49	6	23	copy fasta	HSPBAP1	chr3	122734999	122798831
HSPBAP1_chr3_122734999_122798831	0/0	t0003	498	57	20	9	25	0	3	copy fasta	HSPBAP1	chr3	122734999	122798831
HSPBAP1_chr3_122734999_122798831	0/1	t0004	498	8	0	3	0	2	2	copy fasta	HSPBAP1	chr3	122734999	122798831
HSPBAP1_chr3_122734999_122798831	0/0	t0005	498	3	0	0	3	0	0	copy fasta	HSPBAP1	chr3	122734999	122798831
HSPBAP1_chr3_122734999_122798831	0/0	t0006	498	2	2	0	0	0	0	copy fasta	HSPBAP1	chr3	122734999	122798831
HSPBAP1_chr3_122734999_122798831	0/0	t0007	498	1	0	0	1	0	0	copy fasta	HSPBAP1	chr3	122734999	122798831
HSPBAP1_chr3_122734999_122798831	0/0	t0008	498	1	0	1	0	0	0	copy fasta	HSPBAP1	chr3	122734999	122798831
HSPBP1_chr19_55257223_55285110	1/1	t0001	556	311	92	60	99	14	44	copy fasta	HSPBP1	chr19	55257223	55285110