JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HSPBP1_chr19_55257223_55285110	0/0	t0002	556	1	1	0	0	0	0	copy fasta	HSPBP1	chr19	55257223	55285110
HSPBP1_chr19_55257223_55285110	0/0	t0003	556	1	0	0	1	0	0	copy fasta	HSPBP1	chr19	55257223	55285110
HSPBP1_chr19_55257223_55285110	0/0	t0004	556	1	1	0	0	0	0	copy fasta	HSPBP1	chr19	55257223	55285110
HSPD1_chr2_197481584_197504840	1/0	t0001	524	311	61	62	143	9	35	copy fasta	HSPD1	chr2	197481584	197504840
HSPD1_chr2_197481584_197504840	0/1	t0002	524	85	29	12	37	5	1	copy fasta	HSPD1	chr2	197481584	197504840
HSPE1_chr2_197495379_197508449	1/1	t0001	249	403	81	74	190	16	40	copy fasta	HSPE1	chr2	197495379	197508449
HSPE1_chr2_197495379_197508449	0/0	t0002	249	3	3	0	0	0	0	copy fasta	HSPE1	chr2	197495379	197508449
HSPG2_chr1_21817244_21942310	1/0	t0001	1166	208	50	46	94	1	16	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/1	t0002	1166	82	30	15	26	2	8	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	t0003	1166	3	2	1	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	t0004	1166	3	3	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	t0005	1166	3	0	1	0	1	1	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	t0006	1166	2	2	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	t0007	1166	1	0	0	0	0	1	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	t0008	1166	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	t0009	1152	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	t0010	1166	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	t0011	1166	1	0	0	1	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	t0012	1166	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	t0013	1166	1	0	0	1	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	t0014	1166	1	0	1	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPG2_chr1_21817244_21942310	0/0	t0015	1166	1	1	0	0	0	0	copy fasta	HSPG2	chr1	21817244	21942310
HSPH1_chr13_31129973_31166904	0/0	t0001	2668	133	11	25	79	2	16	copy fasta	HSPH1	chr13	31129973	31166904
HSPH1_chr13_31129973_31166904	0/1	t0002	2668	80	5	17	47	5	5	copy fasta	HSPH1	chr13	31129973	31166904
HSPH1_chr13_31129973_31166904	0/0	t0003	2668	49	15	17	3	7	7	copy fasta	HSPH1	chr13	31129973	31166904
HSPH1_chr13_31129973_31166904	0/0	t0004	2668	41	19	7	7	2	6	copy fasta	HSPH1	chr13	31129973	31166904
HSPH1_chr13_31129973_31166904	1/0	t0005	2668	41	4	4	28	2	2	copy fasta	HSPH1	chr13	31129973	31166904
HSPH1_chr13_31129973_31166904	0/0	t0006	2666	15	14	1	0	0	0	copy fasta	HSPH1	chr13	31129973	31166904
HSPH1_chr13_31129973_31166904	0/0	t0007	2668	6	5	1	0	0	0	copy fasta	HSPH1	chr13	31129973	31166904
HSPH1_chr13_31129973_31166904	0/0	t0008	2666	5	5	0	0	0	0	copy fasta	HSPH1	chr13	31129973	31166904
HSPH1_chr13_31129973_31166904	0/0	t0009	2666	3	3	0	0	0	0	copy fasta	HSPH1	chr13	31129973	31166904
HSPH1_chr13_31129973_31166904	0/0	t0010	2662	3	3	0	0	0	0	copy fasta	HSPH1	chr13	31129973	31166904
HSPH1_chr13_31129973_31166904	0/0	t0011	2666	2	0	0	2	0	0	copy fasta	HSPH1	chr13	31129973	31166904
HSPH1_chr13_31129973_31166904	0/0	t0012	2668	2	0	2	0	0	0	copy fasta	HSPH1	chr13	31129973	31166904
HSPH1_chr13_31129973_31166904	0/0	t0013	2666	2	0	0	2	0	0	copy fasta	HSPH1	chr13	31129973	31166904
HSPH1_chr13_31129973_31166904	0/0	t0014	2668	2	2	0	0	0	0	copy fasta	HSPH1	chr13	31129973	31166904
HSPH1_chr13_31129973_31166904	0/0	t0015	2666	2	2	0	0	0	0	copy fasta	HSPH1	chr13	31129973	31166904
HSPH1_chr13_31129973_31166904	0/0	t0016	2668	1	0	0	1	0	0	copy fasta	HSPH1	chr13	31129973	31166904
HSPH1_chr13_31129973_31166904	0/0	t0017	2668	1	0	0	1	0	0	copy fasta	HSPH1	chr13	31129973	31166904
HSPH1_chr13_31129973_31166904	0/0	t0018	2668	1	1	0	0	0	0	copy fasta	HSPH1	chr13	31129973	31166904
HSPH1_chr13_31129973_31166904	0/0	t0019	2668	1	1	0	0	0	0	copy fasta	HSPH1	chr13	31129973	31166904
HSPH1_chr13_31129973_31166904	0/0	t0020	2668	1	0	0	1	0	0	copy fasta	HSPH1	chr13	31129973	31166904
HSPH1_chr13_31129973_31166904	0/0	t0021	2666	1	1	0	0	0	0	copy fasta	HSPH1	chr13	31129973	31166904
HSPH1_chr13_31129973_31166904	0/0	t0022	2668	1	0	0	1	0	0	copy fasta	HSPH1	chr13	31129973	31166904
HSPH1_chr13_31129973_31166904	0/0	t0023	2668	1	0	0	1	0	0	copy fasta	HSPH1	chr13	31129973	31166904
HSPH1_chr13_31129973_31166904	0/0	t0024	2668	1	0	0	1	0	0	copy fasta	HSPH1	chr13	31129973	31166904
HSPH1_chr13_31129973_31166904	0/0	t0025	2668	1	1	0	0	0	0	copy fasta	HSPH1	chr13	31129973	31166904
HTATIP2_chr11_20358714_20388782	0/1	t0001	1102	145	35	26	64	2	17	copy fasta	HTATIP2	chr11	20358714	20388782
HTATIP2_chr11_20358714_20388782	0/0	t0002	1102	78	10	6	61	0	1	copy fasta	HTATIP2	chr11	20358714	20388782
HTATIP2_chr11_20358714_20388782	1/0	t0003	1102	51	6	7	35	0	2	copy fasta	HTATIP2	chr11	20358714	20388782