JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HTATIP2_chr11_20358714_20388782	0/0	t0004	1102	49	10	14	12	4	9	copy fasta	HTATIP2	chr11	20358714	20388782
HTATIP2_chr11_20358714_20388782	0/0	t0005	1102	49	4	10	18	10	7	copy fasta	HTATIP2	chr11	20358714	20388782
HTATIP2_chr11_20358714_20388782	0/0	t0006	1102	18	17	1	0	0	0	copy fasta	HTATIP2	chr11	20358714	20388782
HTATIP2_chr11_20358714_20388782	0/0	t0007	1102	6	0	4	2	0	0	copy fasta	HTATIP2	chr11	20358714	20388782
HTATIP2_chr11_20358714_20388782	0/0	t0008	1102	5	1	0	4	0	0	copy fasta	HTATIP2	chr11	20358714	20388782
HTATIP2_chr11_20358714_20388782	0/0	t0009	1102	4	3	1	0	0	0	copy fasta	HTATIP2	chr11	20358714	20388782
HTATIP2_chr11_20358714_20388782	0/0	t0010	1101	3	3	0	0	0	0	copy fasta	HTATIP2	chr11	20358714	20388782
HTATIP2_chr11_20358714_20388782	0/0	t0011	1102	3	0	0	3	0	0	copy fasta	HTATIP2	chr11	20358714	20388782
HTATIP2_chr11_20358714_20388782	0/0	t0012	1102	2	2	0	0	0	0	copy fasta	HTATIP2	chr11	20358714	20388782
HTATIP2_chr11_20358714_20388782	0/0	t0013	1101	2	2	0	0	0	0	copy fasta	HTATIP2	chr11	20358714	20388782
HTATIP2_chr11_20358714_20388782	0/0	t0014	1102	1	0	1	0	0	0	copy fasta	HTATIP2	chr11	20358714	20388782
HTATIP2_chr11_20358714_20388782	0/0	t0015	1102	1	1	0	0	0	0	copy fasta	HTATIP2	chr11	20358714	20388782
HTATIP2_chr11_20358714_20388782	0/0	t0016	1137	1	1	0	0	0	0	copy fasta	HTATIP2	chr11	20358714	20388782
HTATIP2_chr11_20358714_20388782	0/0	t0017	1102	1	1	0	0	0	0	copy fasta	HTATIP2	chr11	20358714	20388782
HTATIP2_chr11_20358714_20388782	0/0	t0018	1102	1	0	0	1	0	0	copy fasta	HTATIP2	chr11	20358714	20388782
HTATSF1_chrX_136492592_136517346	1/1	t0001	427	269	59	48	125	7	28	copy fasta	HTATSF1	chrX	136492592	136517346
HTATSF1_chrX_136492592_136517346	0/0	t0002	427	3	3	0	0	0	0	copy fasta	HTATSF1	chrX	136492592	136517346
HTATSF1_chrX_136492592_136517346	0/0	t0003	427	1	0	0	1	0	0	copy fasta	HTATSF1	chrX	136492592	136517346
HTATSF1_chrX_136492592_136517346	0/0	t0004	427	1	0	0	1	0	0	copy fasta	HTATSF1	chrX	136492592	136517346
HTATSF1_chrX_136492592_136517346	0/0	t0005	427	1	0	0	1	0	0	copy fasta	HTATSF1	chrX	136492592	136517346
HTATSF1_chrX_136492592_136517346	0/0	t0006	427	1	0	1	0	0	0	copy fasta	HTATSF1	chrX	136492592	136517346
HTD2_chr3_58301520_58325193	0/0	t0001	2621	98	28	22	38	2	8	copy fasta	HTD2	chr3	58301520	58325193
HTD2_chr3_58301520_58325193	0/0	t0002	2624	82	1	8	56	0	17	copy fasta	HTD2	chr3	58301520	58325193
HTD2_chr3_58301520_58325193	1/1	t0003	2621	43	14	19	0	1	7	copy fasta	HTD2	chr3	58301520	58325193
HTD2_chr3_58301520_58325193	0/0	t0004	2625	31	0	8	23	0	0	copy fasta	HTD2	chr3	58301520	58325193
HTD2_chr3_58301520_58325193	0/0	t0005	2621	29	20	7	0	1	1	copy fasta	HTD2	chr3	58301520	58325193
HTD2_chr3_58301520_58325193	0/0	t0006	2623	10	10	0	0	0	0	copy fasta	HTD2	chr3	58301520	58325193
HTD2_chr3_58301520_58325193	0/0	t0007	2620	10	2	3	0	3	2	copy fasta	HTD2	chr3	58301520	58325193
HTD2_chr3_58301520_58325193	0/0	t0008	2625	10	0	0	7	0	3	copy fasta	HTD2	chr3	58301520	58325193
HTD2_chr3_58301520_58325193	0/0	t0009	2624	6	1	5	0	0	0	copy fasta	HTD2	chr3	58301520	58325193
HTD2_chr3_58301520_58325193	0/0	t0010	2621	5	4	1	0	0	0	copy fasta	HTD2	chr3	58301520	58325193
HTD2_chr3_58301520_58325193	0/0	t0011	2626	4	0	1	3	0	0	copy fasta	HTD2	chr3	58301520	58325193
HTD2_chr3_58301520_58325193	0/0	t0012	2622	4	1	1	2	0	0	copy fasta	HTD2	chr3	58301520	58325193
HTD2_chr3_58301520_58325193	0/0	t0013	2620	4	1	0	2	1	0	copy fasta	HTD2	chr3	58301520	58325193
HTD2_chr3_58301520_58325193	0/0	t0014	2622	3	3	0	0	0	0	copy fasta	HTD2	chr3	58301520	58325193
HTD2_chr3_58301520_58325193	0/0	t0015	2622	2	1	0	0	0	1	copy fasta	HTD2	chr3	58301520	58325193
HTD2_chr3_58301520_58325193	0/0	t0016	2620	2	0	2	0	0	0	copy fasta	HTD2	chr3	58301520	58325193
HTD2_chr3_58301520_58325193	0/0	t0017	2618	2	2	0	0	0	0	copy fasta	HTD2	chr3	58301520	58325193
HTD2_chr3_58301520_58325193	0/0	t0018	2619	2	2	0	0	0	0	copy fasta	HTD2	chr3	58301520	58325193
HTD2_chr3_58301520_58325193	0/0	t0019	2623	2	0	0	1	0	1	copy fasta	HTD2	chr3	58301520	58325193
HTD2_chr3_58301520_58325193	0/0	t0020	2621	2	0	0	0	2	0	copy fasta	HTD2	chr3	58301520	58325193
HTD2_chr3_58301520_58325193	0/0	t0021	2621	1	1	0	0	0	0	copy fasta	HTD2	chr3	58301520	58325193
HTD2_chr3_58301520_58325193	0/0	t0022	2622	1	1	0	0	0	0	copy fasta	HTD2	chr3	58301520	58325193
HTD2_chr3_58301520_58325193	0/0	t0023	2621	1	0	0	0	0	1	copy fasta	HTD2	chr3	58301520	58325193
HTD2_chr3_58301520_58325193	0/0	t0024	2624	1	0	0	1	0	0	copy fasta	HTD2	chr3	58301520	58325193
HTD2_chr3_58301520_58325193	0/0	t0025	2620	1	1	0	0	0	0	copy fasta	HTD2	chr3	58301520	58325193
HTD2_chr3_58301520_58325193	0/0	t0026	2627	1	0	0	1	0	0	copy fasta	HTD2	chr3	58301520	58325193
HTD2_chr3_58301520_58325193	0/0	t0027	2625	1	0	0	1	0	0	copy fasta	HTD2	chr3	58301520	58325193
HTD2_chr3_58301520_58325193	0/0	t0028	2625	1	0	1	0	0	0	copy fasta	HTD2	chr3	58301520	58325193
HTD2_chr3_58301520_58325193	0/0	t0029	2624	1	0	0	0	0	1	copy fasta	HTD2	chr3	58301520	58325193