JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HTD2_chr3_58301520_58325193	0/0	t0030	2625	1	0	1	0	0	0	copy fasta	HTD2	chr3	58301520	58325193
HTD2_chr3_58301520_58325193	0/0	t0031	2623	1	0	1	0	0	0	copy fasta	HTD2	chr3	58301520	58325193
HTD2_chr3_58301520_58325193	0/0	t0032	2623	1	0	0	1	0	0	copy fasta	HTD2	chr3	58301520	58325193
HTD2_chr3_58301520_58325193	0/0	t0033	2620	1	0	0	1	0	0	copy fasta	HTD2	chr3	58301520	58325193
HTD2_chr3_58301520_58325193	0/0	t0034	2606	1	0	0	0	0	1	copy fasta	HTD2	chr3	58301520	58325193
HTD2_chr3_58301520_58325193	0/0	t0035	2621	1	0	0	0	0	1	copy fasta	HTD2	chr3	58301520	58325193
HTD2_chr3_58301520_58325193	0/0	t0036	2621	1	0	0	1	0	0	copy fasta	HTD2	chr3	58301520	58325193
HTD2_chr3_58301520_58325193	0/0	t0037	2621	1	1	0	0	0	0	copy fasta	HTD2	chr3	58301520	58325193
HTN1_chr4_70045438_70063848	1/1	t0001	374	412	91	73	185	18	43	copy fasta	HTN1	chr4	70045438	70063848
HTN1_chr4_70045438_70063848	0/0	t0002	374	21	1	3	14	0	3	copy fasta	HTN1	chr4	70045438	70063848
HTN1_chr4_70045438_70063848	0/0	t0003	374	3	3	0	0	0	0	copy fasta	HTN1	chr4	70045438	70063848
HTN1_chr4_70045438_70063848	0/0	t0004	374	3	3	0	0	0	0	copy fasta	HTN1	chr4	70045438	70063848
HTN1_chr4_70045438_70063848	0/0	t0005	316	1	0	0	1	0	0	copy fasta	HTN1	chr4	70045438	70063848
HTN3_chr4_70023459_70041538	0/1	t0001	377	197	32	33	105	11	15	copy fasta	HTN3	chr4	70023459	70041538
HTN3_chr4_70023459_70041538	1/0	t0002	377	164	35	36	67	7	18	copy fasta	HTN3	chr4	70023459	70041538
HTN3_chr4_70023459_70041538	0/0	t0003	377	21	1	3	14	0	3	copy fasta	HTN3	chr4	70023459	70041538
HTN3_chr4_70023459_70041538	0/0	t0004	377	16	14	2	0	0	0	copy fasta	HTN3	chr4	70023459	70041538
HTN3_chr4_70023459_70041538	0/0	t0005	377	12	10	0	0	0	2	copy fasta	HTN3	chr4	70023459	70041538
HTN3_chr4_70023459_70041538	0/0	t0006	377	1	1	0	0	0	0	copy fasta	HTN3	chr4	70023459	70041538
HTN3_chr4_70023459_70041538	0/0	t0007	377	1	1	0	0	0	0	copy fasta	HTN3	chr4	70023459	70041538
HTR1A_chr5_63952874_63967445	0/0	t0001	3304	152	13	21	103	4	11	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	1/1	t0002	3304	118	22	32	36	9	17	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	t0003	3304	67	22	16	13	5	11	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	t0004	3304	37	27	1	9	0	0	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	t0005	3304	17	1	6	9	0	1	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	t0006	3304	14	0	1	13	0	0	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	t0007	3304	5	0	0	5	0	0	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	t0008	3304	2	2	0	0	0	0	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	t0009	3304	2	2	0	0	0	0	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	t0010	3304	2	0	2	0	0	0	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	t0011	3304	2	1	1	0	0	0	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	t0012	3304	1	1	0	0	0	0	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	t0013	3304	1	0	0	1	0	0	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	t0014	3304	1	1	0	0	0	0	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	t0015	3304	1	1	0	0	0	0	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	t0016	3304	1	0	1	0	0	0	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	t0017	3304	1	0	0	0	0	1	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	t0018	3304	1	0	0	1	0	0	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	t0019	3304	1	0	0	1	0	0	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	t0020	3304	1	0	0	1	0	0	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	t0021	3304	1	1	0	0	0	0	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	t0022	3304	1	0	0	1	0	0	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	t0023	3304	1	1	0	0	0	0	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	t0024	3304	1	1	0	0	0	0	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	t0025	3304	1	0	0	1	0	0	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	t0026	3304	1	1	0	0	0	0	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	t0027	3304	1	0	0	0	0	1	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	t0028	3304	1	1	0	0	0	0	copy fasta	HTR1A	chr5	63952874	63967445
HTR1A_chr5_63952874_63967445	0/0	t0029	3304	1	0	1	0	0	0	copy fasta	HTR1A	chr5	63952874	63967445
HTR1B_chr6_77455924_77468491	0/0	t0001	1396	166	20	33	100	3	10	copy fasta	HTR1B	chr6	77455924	77468491