JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HTR1B_chr6_77455924_77468491	0/1	t0002	1394	79	7	21	22	9	19	copy fasta	HTR1B	chr6	77455924	77468491
HTR1B_chr6_77455924_77468491	0/0	t0003	1396	76	32	3	32	3	6	copy fasta	HTR1B	chr6	77455924	77468491
HTR1B_chr6_77455924_77468491	1/0	t0004	1396	49	1	7	36	2	2	copy fasta	HTR1B	chr6	77455924	77468491
HTR1B_chr6_77455924_77468491	0/0	t0005	1396	27	4	4	16	1	2	copy fasta	HTR1B	chr6	77455924	77468491
HTR1B_chr6_77455924_77468491	0/0	t0006	1394	13	13	0	0	0	0	copy fasta	HTR1B	chr6	77455924	77468491
HTR1B_chr6_77455924_77468491	0/0	t0007	1396	9	9	0	0	0	0	copy fasta	HTR1B	chr6	77455924	77468491
HTR1B_chr6_77455924_77468491	0/0	t0008	1396	8	0	0	8	0	0	copy fasta	HTR1B	chr6	77455924	77468491
HTR1B_chr6_77455924_77468491	0/0	t0009	1396	5	5	0	0	0	0	copy fasta	HTR1B	chr6	77455924	77468491
HTR1B_chr6_77455924_77468491	0/0	t0010	1396	4	4	0	0	0	0	copy fasta	HTR1B	chr6	77455924	77468491
HTR1B_chr6_77455924_77468491	0/0	t0011	1396	3	0	0	3	0	0	copy fasta	HTR1B	chr6	77455924	77468491
HTR1B_chr6_77455924_77468491	0/0	t0012	1396	1	0	1	0	0	0	copy fasta	HTR1B	chr6	77455924	77468491
HTR1B_chr6_77455924_77468491	0/0	t0013	1396	1	0	0	0	0	1	copy fasta	HTR1B	chr6	77455924	77468491
HTR1B_chr6_77455924_77468491	0/0	t0014	1396	1	0	0	0	0	1	copy fasta	HTR1B	chr6	77455924	77468491
HTR1B_chr6_77455924_77468491	0/0	t0015	1396	1	0	1	0	0	0	copy fasta	HTR1B	chr6	77455924	77468491
HTR1B_chr6_77455924_77468491	0/0	t0016	1396	1	1	0	0	0	0	copy fasta	HTR1B	chr6	77455924	77468491
HTR1B_chr6_77455924_77468491	0/0	t0017	1394	1	0	0	1	0	0	copy fasta	HTR1B	chr6	77455924	77468491
HTR1B_chr6_77455924_77468491	0/0	t0018	1394	1	0	0	0	0	1	copy fasta	HTR1B	chr6	77455924	77468491
HTR1D_chr1_23186895_23222502	1/0	t0001	2186	104	5	27	58	5	8	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/1	t0002	2187	72	17	9	40	0	5	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	t0003	2187	68	7	17	30	2	12	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	t0004	2187	24	18	5	0	1	0	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	t0005	2186	17	16	1	0	0	0	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	t0006	2188	9	7	2	0	0	0	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	t0007	2187	8	6	2	0	0	0	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	t0008	2185	5	4	1	0	0	0	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	t0009	2187	4	1	0	0	0	3	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	t0010	2187	4	0	1	0	0	3	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	t0011	2187	3	0	0	3	0	0	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	t0012	2187	3	0	1	0	2	0	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	t0013	2188	3	0	0	3	0	0	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	t0014	2187	3	0	1	1	0	1	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	t0015	2188	2	0	0	2	0	0	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	t0016	2187	2	0	1	0	0	1	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	t0017	2187	2	0	0	2	0	0	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	t0018	2187	2	0	0	2	0	0	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	t0019	2186	1	1	0	0	0	0	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	t0020	2187	1	1	0	0	0	0	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	t0021	2186	1	0	0	1	0	0	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	t0022	2186	1	0	0	1	0	0	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	t0023	2186	1	0	0	1	0	0	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	t0024	2187	1	0	0	0	0	1	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	t0025	2186	1	0	0	1	0	0	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	t0026	2187	1	1	0	0	0	0	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	t0027	2185	1	1	0	0	0	0	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	t0028	2186	1	0	0	1	0	0	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	t0029	2187	1	0	1	0	0	0	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	t0030	2187	1	0	0	0	0	1	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	t0031	2188	1	0	1	0	0	0	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	t0032	2188	1	0	0	0	0	1	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	t0033	2186	1	1	0	0	0	0	copy fasta	HTR1D	chr1	23186895	23222502