JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HTR1D_chr1_23186895_23222502	0/0	t0034	2187	1	1	0	0	0	0	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	t0035	2187	1	0	0	1	0	0	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	t0036	2175	1	0	0	1	0	0	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	t0037	2187	1	0	0	1	0	0	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	t0038	2187	1	1	0	0	0	0	copy fasta	HTR1D	chr1	23186895	23222502
HTR1D_chr1_23186895_23222502	0/0	t0039	2187	1	0	0	1	0	0	copy fasta	HTR1D	chr1	23186895	23222502
HTR1E_chr6_86932528_87021679	1/1	t0001	729	207	38	29	105	5	28	copy fasta	HTR1E	chr6	86932528	87021679
HTR1E_chr6_86932528_87021679	0/0	t0002	729	79	20	13	41	3	2	copy fasta	HTR1E	chr6	86932528	87021679
HTR1E_chr6_86932528_87021679	0/0	t0003	729	3	3	0	0	0	0	copy fasta	HTR1E	chr6	86932528	87021679
HTR1E_chr6_86932528_87021679	0/0	t0004	729	3	3	0	0	0	0	copy fasta	HTR1E	chr6	86932528	87021679
HTR1E_chr6_86932528_87021679	0/0	t0005	729	2	2	0	0	0	0	copy fasta	HTR1E	chr6	86932528	87021679
HTR1E_chr6_86932528_87021679	0/0	t0006	729	2	0	0	2	0	0	copy fasta	HTR1E	chr6	86932528	87021679
HTR1E_chr6_86932528_87021679	0/0	t0007	729	2	2	0	0	0	0	copy fasta	HTR1E	chr6	86932528	87021679
HTR1E_chr6_86932528_87021679	0/0	t0008	729	1	1	0	0	0	0	copy fasta	HTR1E	chr6	86932528	87021679
HTR1E_chr6_86932528_87021679	0/0	t0009	729	1	1	0	0	0	0	copy fasta	HTR1E	chr6	86932528	87021679
HTR1F_chr3_87787706_87998839	0/1	t0001	2286	87	12	24	33	4	13	copy fasta	HTR1F	chr3	87787706	87998839
HTR1F_chr3_87787706_87998839	0/0	t0002	2285	74	9	9	42	6	8	copy fasta	HTR1F	chr3	87787706	87998839
HTR1F_chr3_87787706_87998839	1/0	t0003	2286	46	33	9	2	0	1	copy fasta	HTR1F	chr3	87787706	87998839
HTR1F_chr3_87787706_87998839	0/0	t0004	2286	18	2	0	14	0	2	copy fasta	HTR1F	chr3	87787706	87998839
HTR1F_chr3_87787706_87998839	0/0	t0005	2286	13	11	2	0	0	0	copy fasta	HTR1F	chr3	87787706	87998839
HTR1F_chr3_87787706_87998839	0/0	t0006	2286	2	2	0	0	0	0	copy fasta	HTR1F	chr3	87787706	87998839
HTR1F_chr3_87787706_87998839	0/0	t0007	2285	2	0	0	2	0	0	copy fasta	HTR1F	chr3	87787706	87998839
HTR1F_chr3_87787706_87998839	0/0	t0008	2285	2	2	0	0	0	0	copy fasta	HTR1F	chr3	87787706	87998839
HTR1F_chr3_87787706_87998839	0/0	t0009	2285	1	0	1	0	0	0	copy fasta	HTR1F	chr3	87787706	87998839
HTR1F_chr3_87787706_87998839	0/0	t0010	2286	1	0	0	1	0	0	copy fasta	HTR1F	chr3	87787706	87998839
HTR1F_chr3_87787706_87998839	0/0	t0011	2286	1	1	0	0	0	0	copy fasta	HTR1F	chr3	87787706	87998839
HTR1F_chr3_87787706_87998839	0/0	t0012	2286	1	0	1	0	0	0	copy fasta	HTR1F	chr3	87787706	87998839
HTR1F_chr3_87787706_87998839	0/0	t0013	2286	1	1	0	0	0	0	copy fasta	HTR1F	chr3	87787706	87998839
HTR1F_chr3_87787706_87998839	0/0	t0014	2286	1	1	0	0	0	0	copy fasta	HTR1F	chr3	87787706	87998839
HTR2A_chr13_46826546_46902053	0/1	t0001	4000	188	19	42	98	10	18	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0002	4001	44	4	2	33	0	5	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0003	4002	14	5	1	1	2	5	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	1/0	t0004	4000	10	3	5	0	1	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0005	4001	8	8	0	0	0	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0006	4001	5	3	2	0	0	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0007	4001	4	4	0	0	0	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0008	4000	3	2	0	0	0	1	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0009	4001	3	0	2	0	0	1	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0010	4001	3	2	1	0	0	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0011	4000	2	2	0	0	0	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0012	4001	2	1	0	1	0	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0013	4001	2	0	2	0	0	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0014	4000	2	2	0	0	0	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0015	4000	2	1	0	0	0	1	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0016	4001	2	2	0	0	0	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0017	4000	2	2	0	0	0	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0018	4001	2	0	0	0	1	1	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0019	4002	2	2	0	0	0	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0020	4001	2	2	0	0	0	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0021	4001	2	2	0	0	0	0	copy fasta	HTR2A	chr13	46826546	46902053