JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HTR2A_chr13_46826546_46902053	0/0	t0022	4000	2	2	0	0	0	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0023	4000	1	0	0	0	0	1	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0024	4001	1	1	0	0	0	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0025	4000	1	0	0	0	0	1	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0026	4001	1	1	0	0	0	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0027	4001	1	1	0	0	0	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0028	4001	1	0	0	1	0	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0029	4002	1	0	0	1	0	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0030	4001	1	0	0	1	0	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0031	4001	1	1	0	0	0	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0032	4001	1	0	1	0	0	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0033	4000	1	1	0	0	0	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0034	4000	1	1	0	0	0	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0035	4000	1	0	0	1	0	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0036	4000	1	0	0	0	0	1	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0037	4000	1	0	0	1	0	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0038	4000	1	0	0	1	0	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0039	4000	1	1	0	0	0	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0040	4000	1	0	0	0	0	1	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0041	4000	1	0	0	1	0	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0042	4001	1	1	0	0	0	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0043	4000	1	0	1	0	0	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0044	4000	1	1	0	0	0	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0045	4001	1	1	0	0	0	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0046	4001	1	1	0	0	0	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0047	4001	1	1	0	0	0	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0048	4001	1	1	0	0	0	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0049	4001	1	1	0	0	0	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0050	4001	1	1	0	0	0	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0051	4001	1	0	1	0	0	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2A_chr13_46826546_46902053	0/0	t0052	4001	1	1	0	0	0	0	copy fasta	HTR2A	chr13	46826546	46902053
HTR2B_chr2_231103230_231130042	1/1	t0001	725	408	87	62	202	12	43	copy fasta	HTR2B	chr2	231103230	231130042
HTR2B_chr2_231103230_231130042	0/0	t0002	725	3	0	0	2	0	1	copy fasta	HTR2B	chr2	231103230	231130042
HTR2B_chr2_231103230_231130042	0/0	t0003	725	3	3	0	0	0	0	copy fasta	HTR2B	chr2	231103230	231130042
HTR2B_chr2_231103230_231130042	0/0	t0004	725	2	0	0	2	0	0	copy fasta	HTR2B	chr2	231103230	231130042
HTR2C_chrX_114579086_114915061	0/0	t0001	3367	104	25	15	48	3	13	copy fasta	HTR2C	chrX	114579086	114915061
HTR2C_chrX_114579086_114915061	1/1	t0002	3367	44	16	10	7	3	6	copy fasta	HTR2C	chrX	114579086	114915061
HTR2C_chrX_114579086_114915061	0/0	t0003	3372	4	0	0	4	0	0	copy fasta	HTR2C	chrX	114579086	114915061
HTR2C_chrX_114579086_114915061	0/0	t0004	3367	4	4	0	0	0	0	copy fasta	HTR2C	chrX	114579086	114915061
HTR2C_chrX_114579086_114915061	0/0	t0005	3367	3	2	1	0	0	0	copy fasta	HTR2C	chrX	114579086	114915061
HTR2C_chrX_114579086_114915061	0/0	t0006	3367	3	0	0	3	0	0	copy fasta	HTR2C	chrX	114579086	114915061
HTR2C_chrX_114579086_114915061	0/0	t0007	3367	1	1	0	0	0	0	copy fasta	HTR2C	chrX	114579086	114915061
HTR2C_chrX_114579086_114915061	0/0	t0008	3368	1	0	0	1	0	0	copy fasta	HTR2C	chrX	114579086	114915061
HTR2C_chrX_114579086_114915061	0/0	t0009	3367	1	0	0	0	1	0	copy fasta	HTR2C	chrX	114579086	114915061
HTR2C_chrX_114579086_114915061	0/0	t0010	3367	1	0	0	0	0	1	copy fasta	HTR2C	chrX	114579086	114915061
HTR2C_chrX_114579086_114915061	0/0	t0011	3367	1	1	0	0	0	0	copy fasta	HTR2C	chrX	114579086	114915061
HTR2C_chrX_114579086_114915061	0/0	t0012	3367	1	1	0	0	0	0	copy fasta	HTR2C	chrX	114579086	114915061
HTR2C_chrX_114579086_114915061	0/0	t0013	3372	1	0	0	1	0	0	copy fasta	HTR2C	chrX	114579086	114915061
HTR2C_chrX_114579086_114915061	0/0	t0014	3367	1	1	0	0	0	0	copy fasta	HTR2C	chrX	114579086	114915061
HTR2C_chrX_114579086_114915061	0/0	t0015	3367	1	0	0	1	0	0	copy fasta	HTR2C	chrX	114579086	114915061