JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HTR2C_chrX_114579086_114915061	0/0	t0016	3367	1	0	0	1	0	0	copy fasta	HTR2C	chrX	114579086	114915061
HTR2C_chrX_114579086_114915061	0/0	t0017	3367	1	0	0	0	0	1	copy fasta	HTR2C	chrX	114579086	114915061
HTR2C_chrX_114579086_114915061	0/0	t0018	3367	1	0	1	0	0	0	copy fasta	HTR2C	chrX	114579086	114915061
HTR2C_chrX_114579086_114915061	0/0	t0019	3367	1	0	0	1	0	0	copy fasta	HTR2C	chrX	114579086	114915061
HTR2C_chrX_114579086_114915061	0/0	t0020	3365	1	1	0	0	0	0	copy fasta	HTR2C	chrX	114579086	114915061
HTR3A_chr11_113970108_113995313	0/0	t0001	769	311	46	64	156	9	36	copy fasta	HTR3A	chr11	113970108	113995313
HTR3A_chr11_113970108_113995313	0/1	t0002	769	73	15	11	33	4	9	copy fasta	HTR3A	chr11	113970108	113995313
HTR3A_chr11_113970108_113995313	1/0	t0003	769	34	31	2	0	0	0	copy fasta	HTR3A	chr11	113970108	113995313
HTR3A_chr11_113970108_113995313	0/0	t0004	769	2	2	0	0	0	0	copy fasta	HTR3A	chr11	113970108	113995313
HTR3A_chr11_113970108_113995313	0/0	t0005	769	2	0	1	0	0	1	copy fasta	HTR3A	chr11	113970108	113995313
HTR3A_chr11_113970108_113995313	0/0	t0006	769	2	0	0	2	0	0	copy fasta	HTR3A	chr11	113970108	113995313
HTR3A_chr11_113970108_113995313	0/0	t0007	769	1	0	0	0	1	0	copy fasta	HTR3A	chr11	113970108	113995313
HTR3A_chr11_113970108_113995313	0/0	t0008	769	1	1	0	0	0	0	copy fasta	HTR3A	chr11	113970108	113995313
HTR3A_chr11_113970108_113995313	0/0	t0009	769	1	1	0	0	0	0	copy fasta	HTR3A	chr11	113970108	113995313
HTR3A_chr11_113970108_113995313	0/0	t0010	1898	1	0	0	1	0	0	copy fasta	HTR3A	chr11	113970108	113995313
HTR3B_chr11_113899796_113954079	0/0	t0001	3070	62	8	11	34	0	9	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0002	3082	60	4	14	30	3	9	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0003	3083	49	1	5	43	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0004	3085	27	4	2	15	1	5	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0005	3075	27	2	3	17	0	5	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0006	3070	25	0	11	11	0	3	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0007	3081	22	9	4	9	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/1	t0008	3083	12	0	7	0	1	3	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0009	3086	11	0	1	8	0	2	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0010	3086	9	1	1	2	3	2	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0011	3078	8	8	0	0	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0012	3083	7	7	0	0	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0013	3079	6	0	0	6	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0014	3082	5	3	2	0	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0015	3070	5	0	0	5	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0016	3085	5	0	0	5	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0017	3086	4	3	1	0	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0018	3079	4	1	1	1	0	1	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0019	3080	4	4	0	0	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0020	3086	3	3	0	0	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0021	3083	3	3	0	0	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0022	3083	3	3	0	0	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0023	3085	3	0	3	0	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0024	3071	3	0	0	1	0	2	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0025	3085	3	3	0	0	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0026	3082	2	2	0	0	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0027	3082	2	0	1	1	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0028	3082	2	2	0	0	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0029	3079	2	0	0	0	2	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0030	3082	2	2	0	0	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0031	3076	2	0	0	2	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0032	3070	1	0	1	0	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0033	3070	1	0	1	0	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0034	3070	1	1	0	0	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0035	3094	1	0	0	0	0	1	copy fasta	HTR3B	chr11	113899796	113954079