JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HTR3B_chr11_113899796_113954079	0/0	t0036	3086	1	0	1	0	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0037	3085	1	0	0	1	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0038	3086	1	0	0	1	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0039	3086	1	0	0	0	0	1	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0040	3087	1	1	0	0	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0041	3082	1	1	0	0	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0042	3082	1	0	0	0	1	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0043	3082	1	0	0	1	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0044	3083	1	0	1	0	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0045	3084	1	1	0	0	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0046	3084	1	0	0	0	1	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0047	3083	1	0	0	1	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0048	3251	1	0	0	0	0	1	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0049	3083	1	0	0	0	0	1	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0050	3081	1	0	0	0	0	1	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0051	3082	1	0	0	1	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	1/0	t0052	3081	1	0	0	0	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0053	3445	1	0	1	0	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0054	3077	1	0	0	1	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0055	3079	1	1	0	0	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0056	3079	1	0	1	0	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0057	3078	1	1	0	0	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0058	3070	1	1	0	0	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0059	3057	1	1	0	0	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0060	3082	1	1	0	0	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0061	3089	1	1	0	0	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0062	3081	1	0	1	0	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0063	3144	1	1	0	0	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0064	3079	1	1	0	0	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0065	3076	1	0	0	1	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0066	3074	1	0	0	1	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3B_chr11_113899796_113954079	0/0	t0067	3067	1	1	0	0	0	0	copy fasta	HTR3B	chr11	113899796	113954079
HTR3C_chr3_184048047_184065673	0/0	t0001	356	285	39	57	149	10	30	copy fasta	HTR3C	chr3	184048047	184065673
HTR3C_chr3_184048047_184065673	1/1	t0002	356	151	50	27	44	8	20	copy fasta	HTR3C	chr3	184048047	184065673
HTR3C_chr3_184048047_184065673	0/0	t0003	356	4	4	0	0	0	0	copy fasta	HTR3C	chr3	184048047	184065673
HTR3C_chr3_184048047_184065673	0/0	t0004	356	1	0	0	1	0	0	copy fasta	HTR3C	chr3	184048047	184065673
HTR3C_chr3_184048047_184065673	0/0	t0005	356	1	1	0	0	0	0	copy fasta	HTR3C	chr3	184048047	184065673
HTR3D_chr3_184026742_184044369	0/0	t0001	408	139	27	26	78	1	7	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	0/0	t0002	408	118	18	15	68	6	11	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	0/1	t0003	408	86	7	17	49	4	8	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	1/0	t0004	395	41	2	13	2	4	19	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	0/0	t0005	408	35	31	4	0	0	0	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	0/0	t0006	395	29	8	9	7	2	3	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	0/0	t0007	395	1	0	0	0	1	0	copy fasta	HTR3D	chr3	184026742	184044369
HTR3D_chr3_184026742_184044369	0/0	t0008	395	1	1	0	0	0	0	copy fasta	HTR3D	chr3	184026742	184044369
HTR3E_chr3_184092064_184111995	1/1	t0001	769	395	71	71	192	14	45	copy fasta	HTR3E	chr3	184092064	184111995
HTR3E_chr3_184092064_184111995	0/0	t0002	769	23	21	2	0	0	0	copy fasta	HTR3E	chr3	184092064	184111995
HTR3E_chr3_184092064_184111995	0/0	t0003	769	2	1	1	0	0	0	copy fasta	HTR3E	chr3	184092064	184111995
HTR3E_chr3_184092064_184111995	0/0	t0004	769	1	1	0	0	0	0	copy fasta	HTR3E	chr3	184092064	184111995
HTR3E_chr3_184092064_184111995	0/0	t0005	769	1	0	0	0	0	1	copy fasta	HTR3E	chr3	184092064	184111995