JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HTR4_chr5_148476547_148659527	1/1	t0001	2170	117	41	17	39	4	14	copy fasta	HTR4	chr5	148476547	148659527
HTR4_chr5_148476547_148659527	0/0	t0002	2170	67	3	6	49	4	5	copy fasta	HTR4	chr5	148476547	148659527
HTR4_chr5_148476547_148659527	0/0	t0003	2170	39	17	1	16	1	4	copy fasta	HTR4	chr5	148476547	148659527
HTR4_chr5_148476547_148659527	0/0	t0004	2170	20	0	0	20	0	0	copy fasta	HTR4	chr5	148476547	148659527
HTR4_chr5_148476547_148659527	0/0	t0005	2170	16	1	7	4	0	4	copy fasta	HTR4	chr5	148476547	148659527
HTR4_chr5_148476547_148659527	0/0	t0006	2170	10	2	3	3	0	2	copy fasta	HTR4	chr5	148476547	148659527
HTR4_chr5_148476547_148659527	0/0	t0007	2170	9	0	0	8	0	1	copy fasta	HTR4	chr5	148476547	148659527
HTR4_chr5_148476547_148659527	0/0	t0008	2170	4	4	0	0	0	0	copy fasta	HTR4	chr5	148476547	148659527
HTR4_chr5_148476547_148659527	0/0	t0009	2170	4	4	0	0	0	0	copy fasta	HTR4	chr5	148476547	148659527
HTR4_chr5_148476547_148659527	0/0	t0010	2170	3	3	0	0	0	0	copy fasta	HTR4	chr5	148476547	148659527
HTR4_chr5_148476547_148659527	0/0	t0011	2170	3	2	1	0	0	0	copy fasta	HTR4	chr5	148476547	148659527
HTR4_chr5_148476547_148659527	0/0	t0012	2170	2	2	0	0	0	0	copy fasta	HTR4	chr5	148476547	148659527
HTR4_chr5_148476547_148659527	0/0	t0013	2170	2	2	0	0	0	0	copy fasta	HTR4	chr5	148476547	148659527
HTR4_chr5_148476547_148659527	0/0	t0014	2170	1	0	0	1	0	0	copy fasta	HTR4	chr5	148476547	148659527
HTR4_chr5_148476547_148659527	0/0	t0015	2170	1	0	1	0	0	0	copy fasta	HTR4	chr5	148476547	148659527
HTR4_chr5_148476547_148659527	0/0	t0016	2170	1	0	0	1	0	0	copy fasta	HTR4	chr5	148476547	148659527
HTR4_chr5_148476547_148659527	0/0	t0017	2170	1	1	0	0	0	0	copy fasta	HTR4	chr5	148476547	148659527
HTR4_chr5_148476547_148659527	0/0	t0018	2170	1	1	0	0	0	0	copy fasta	HTR4	chr5	148476547	148659527
HTR4_chr5_148476547_148659527	0/0	t0019	2170	1	1	0	0	0	0	copy fasta	HTR4	chr5	148476547	148659527
HTR4_chr5_148476547_148659527	0/0	t0020	2170	1	0	0	1	0	0	copy fasta	HTR4	chr5	148476547	148659527
HTR4_chr5_148476547_148659527	0/0	t0021	2170	1	1	0	0	0	0	copy fasta	HTR4	chr5	148476547	148659527
HTR4_chr5_148476547_148659527	0/0	t0022	2170	1	1	0	0	0	0	copy fasta	HTR4	chr5	148476547	148659527
HTR4_chr5_148476547_148659527	0/0	t0023	2170	1	0	1	0	0	0	copy fasta	HTR4	chr5	148476547	148659527
HTR4_chr5_148476547_148659527	0/0	t0024	2170	1	1	0	0	0	0	copy fasta	HTR4	chr5	148476547	148659527
HTR4_chr5_148476547_148659527	0/0	t0025	2170	1	0	0	0	1	0	copy fasta	HTR4	chr5	148476547	148659527
HTR4_chr5_148476547_148659527	0/0	t0026	2170	1	1	0	0	0	0	copy fasta	HTR4	chr5	148476547	148659527
HTR4_chr5_148476547_148659527	0/0	t0027	2170	1	0	1	0	0	0	copy fasta	HTR4	chr5	148476547	148659527
HTR5A_chr7_155065324_155092392	0/1	t0001	3484	153	17	34	81	6	14	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0002	3482	41	1	6	21	4	9	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0003	3484	31	0	8	21	0	2	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0004	3486	21	4	3	14	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0005	3484	14	0	3	8	1	2	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0006	3482	14	0	6	6	0	2	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0007	3484	11	2	4	1	2	2	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0008	3484	11	11	0	0	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0009	3486	11	7	1	1	0	2	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0010	3486	9	0	0	9	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0011	3486	8	5	3	0	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0012	3484	6	6	0	0	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0013	3484	5	5	0	0	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0014	3485	5	4	1	0	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0015	3482	4	0	0	3	0	1	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0016	3484	4	4	0	0	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0017	3484	4	0	0	3	0	1	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0018	3484	3	0	0	1	0	2	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0019	3484	3	3	0	0	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0020	3484	3	3	0	0	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0021	3484	3	3	0	0	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0022	3482	3	0	0	3	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0023	3487	3	0	0	3	0	0	copy fasta	HTR5A	chr7	155065324	155092392