JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HTR5A_chr7_155065324_155092392	0/0	t0024	3484	3	0	0	2	1	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0025	3486	3	0	0	3	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0026	3482	3	0	0	0	3	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0027	3484	2	0	2	0	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0028	3484	2	2	0	0	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0029	3484	2	2	0	0	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0030	3485	2	2	0	0	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0031	3484	2	0	0	2	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0032	3485	2	0	1	0	1	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0033	3482	2	0	0	0	0	2	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0034	3484	1	0	0	1	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0035	3485	1	0	0	0	0	1	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0036	3484	1	0	1	0	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0037	3484	1	1	0	0	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0038	3485	1	0	1	0	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0039	3482	1	0	0	0	0	1	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0040	3484	1	0	0	1	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0041	3485	1	1	0	0	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0042	3486	1	0	0	1	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0043	3484	1	1	0	0	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	1/0	t0044	3482	1	0	0	0	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0045	3482	1	0	0	0	0	1	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0046	3484	1	0	0	1	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0047	3485	1	1	0	0	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0048	3484	1	1	0	0	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0049	3486	1	0	1	0	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0050	3482	1	1	0	0	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0051	3484	1	1	0	0	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0052	3484	1	1	0	0	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0053	3484	1	1	0	0	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0054	3484	1	0	1	0	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0055	3486	1	1	0	0	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0056	3484	1	1	0	0	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0057	3485	1	0	1	0	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0058	3484	1	1	0	0	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0059	3484	1	1	0	0	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0060	3486	1	0	1	0	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0061	3488	1	1	0	0	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0062	3488	1	0	0	1	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0063	3484	1	1	0	0	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0064	3484	1	0	0	0	0	1	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0065	3486	1	0	0	1	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0066	3487	1	0	0	1	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0067	3488	1	0	0	1	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0068	3484	1	0	0	1	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0069	3484	1	0	0	0	0	1	copy fasta	HTR5A	chr7	155065324	155092392
HTR5A_chr7_155065324_155092392	0/0	t0070	3484	1	0	0	1	0	0	copy fasta	HTR5A	chr7	155065324	155092392
HTR6_chr1_19659875_19685966	1/1	t0001	2478	125	2	27	83	2	9	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0002	2478	79	14	12	42	3	8	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0003	2478	46	5	17	6	4	14	copy fasta	HTR6	chr1	19659875	19685966