Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANKRD12_chr18_9131781_9290985	0/0	t0025	5097	2	2	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0026	5096	2	2	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0027	5097	2	0	2	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0028	5096	2	2	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0029	5096	2	0	0	2	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0030	5096	2	0	1	1	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0031	5096	2	0	0	0	2	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0032	5097	2	2	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0033	5096	2	2	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0034	5096	2	2	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0035	5096	1	1	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0036	5089	1	0	0	1	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0037	5094	1	1	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0038	5094	1	1	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0039	5096	1	1	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0040	5097	1	1	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0041	5096	1	1	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0042	5096	1	0	1	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0043	5097	1	1	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0044	5097	1	1	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0045	5098	1	0	0	0	1	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0046	5099	1	0	0	0	0	1	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0047	5094	1	1	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0048	5098	1	0	0	0	0	1	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0049	5096	1	0	0	1	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0050	5098	1	0	0	1	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0051	5097	1	0	0	1	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0052	5096	1	0	0	1	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0053	5097	1	1	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0054	5098	1	0	1	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0055	5098	1	1	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0056	5097	1	1	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0057	5095	1	0	1	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0058	5097	1	0	0	1	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0059	5096	1	0	0	1	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0060	5096	1	0	0	1	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0061	5096	1	0	0	1	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0062	5097	1	0	0	1	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0063	5096	1	0	0	1	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0064	5092	1	0	1	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0065	5092	1	1	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0066	5098	1	0	0	0	0	1	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0067	5097	1	1	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0068	5096	1	0	1	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0069	5096	1	1	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0070	5095	1	1	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0071	5096	1	1	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0072	5096	1	0	0	0	0	1	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0073	5097	1	0	0	1	0	0	copy fasta	ANKRD12	chr18	9131781	9290985
ANKRD12_chr18_9131781_9290985	0/0	t0074	5096	1	1	0	0	0	0	copy fasta	ANKRD12	chr18	9131781	9290985