JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HTR6_chr1_19659875_19685966	0/0	t0004	2478	16	6	1	6	0	3	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0005	2478	15	13	2	0	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0006	2478	12	5	3	0	1	3	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0007	2478	10	8	0	0	0	2	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0008	2478	9	0	0	9	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0009	2478	8	0	2	6	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0010	2478	7	5	1	1	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0011	2478	7	6	0	1	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0012	2478	5	4	1	0	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0013	2478	5	1	4	0	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0014	2478	5	5	0	0	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0015	2478	4	3	0	1	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0016	2478	4	0	1	3	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0017	2478	3	0	3	0	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0018	2478	3	2	1	0	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0019	2478	3	0	0	3	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0020	2478	2	2	0	0	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0021	2478	2	2	0	0	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0022	2478	2	2	0	0	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0023	2478	2	0	0	2	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0024	2478	2	0	2	0	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0025	2478	1	1	0	0	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0026	2478	1	0	1	0	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0027	2478	1	1	0	0	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0028	2478	1	1	0	0	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0029	2478	1	0	1	0	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0030	2478	1	0	0	0	1	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0031	2478	1	0	0	1	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0032	2478	1	1	0	0	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0033	2478	1	1	0	0	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0034	2478	1	0	1	0	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0035	2478	1	1	0	0	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0036	2478	1	0	0	1	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0037	2478	1	1	0	0	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0038	2478	1	1	0	0	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0039	2478	1	0	0	0	0	1	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0040	2478	1	1	0	0	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0041	2478	1	0	0	1	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0042	2478	1	0	0	1	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0043	2478	1	0	0	0	1	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0044	2478	1	0	0	1	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0045	2478	1	0	0	0	0	1	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0046	2478	1	0	0	0	0	1	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0047	2478	1	1	0	0	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR6_chr1_19659875_19685966	0/0	t0048	2478	1	1	0	0	0	0	copy fasta	HTR6	chr1	19659875	19685966
HTR7_chr10_90735823_90863039	1/1	t0001	2028	89	5	24	40	3	15	copy fasta	HTR7	chr10	90735823	90863039
HTR7_chr10_90735823_90863039	0/0	t0002	2028	64	19	10	27	2	6	copy fasta	HTR7	chr10	90735823	90863039
HTR7_chr10_90735823_90863039	0/0	t0003	2028	51	3	7	37	0	4	copy fasta	HTR7	chr10	90735823	90863039
HTR7_chr10_90735823_90863039	0/0	t0004	2019	49	0	10	35	2	2	copy fasta	HTR7	chr10	90735823	90863039
HTR7_chr10_90735823_90863039	0/0	t0005	2028	32	4	1	23	0	4	copy fasta	HTR7	chr10	90735823	90863039