JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HTR7_chr10_90735823_90863039	0/0	t0006	2028	30	19	0	11	0	0	copy fasta	HTR7	chr10	90735823	90863039
HTR7_chr10_90735823_90863039	0/0	t0007	2028	25	14	5	1	1	4	copy fasta	HTR7	chr10	90735823	90863039
HTR7_chr10_90735823_90863039	0/0	t0008	2028	13	13	0	0	0	0	copy fasta	HTR7	chr10	90735823	90863039
HTR7_chr10_90735823_90863039	0/0	t0009	2028	7	0	4	0	0	3	copy fasta	HTR7	chr10	90735823	90863039
HTR7_chr10_90735823_90863039	0/0	t0010	2028	6	4	2	0	0	0	copy fasta	HTR7	chr10	90735823	90863039
HTR7_chr10_90735823_90863039	0/0	t0011	2028	5	0	1	4	0	0	copy fasta	HTR7	chr10	90735823	90863039
HTR7_chr10_90735823_90863039	0/0	t0012	2028	4	3	1	0	0	0	copy fasta	HTR7	chr10	90735823	90863039
HTR7_chr10_90735823_90863039	0/0	t0013	2028	3	0	0	3	0	0	copy fasta	HTR7	chr10	90735823	90863039
HTR7_chr10_90735823_90863039	0/0	t0014	2019	3	0	1	2	0	0	copy fasta	HTR7	chr10	90735823	90863039
HTR7_chr10_90735823_90863039	0/0	t0015	2028	3	2	0	1	0	0	copy fasta	HTR7	chr10	90735823	90863039
HTR7_chr10_90735823_90863039	0/0	t0016	2019	2	0	1	1	0	0	copy fasta	HTR7	chr10	90735823	90863039
HTR7_chr10_90735823_90863039	0/0	t0017	2028	2	2	0	0	0	0	copy fasta	HTR7	chr10	90735823	90863039
HTR7_chr10_90735823_90863039	0/0	t0018	2028	2	0	1	1	0	0	copy fasta	HTR7	chr10	90735823	90863039
HTR7_chr10_90735823_90863039	0/0	t0019	2028	2	2	0	0	0	0	copy fasta	HTR7	chr10	90735823	90863039
HTR7_chr10_90735823_90863039	0/0	t0020	2028	1	1	0	0	0	0	copy fasta	HTR7	chr10	90735823	90863039
HTR7_chr10_90735823_90863039	0/0	t0021	2028	1	1	0	0	0	0	copy fasta	HTR7	chr10	90735823	90863039
HTR7_chr10_90735823_90863039	0/0	t0022	2028	1	0	0	1	0	0	copy fasta	HTR7	chr10	90735823	90863039
HTR7_chr10_90735823_90863039	0/0	t0023	2028	1	0	0	0	0	1	copy fasta	HTR7	chr10	90735823	90863039
HTR7_chr10_90735823_90863039	0/0	t0024	2028	1	0	0	1	0	0	copy fasta	HTR7	chr10	90735823	90863039
HTR7_chr10_90735823_90863039	0/0	t0025	2019	1	0	0	1	0	0	copy fasta	HTR7	chr10	90735823	90863039
HTR7_chr10_90735823_90863039	0/0	t0026	2028	1	0	0	0	0	1	copy fasta	HTR7	chr10	90735823	90863039
HTR7_chr10_90735823_90863039	0/0	t0027	2019	1	0	0	1	0	0	copy fasta	HTR7	chr10	90735823	90863039
HTR7_chr10_90735823_90863039	0/0	t0028	2028	1	1	0	0	0	0	copy fasta	HTR7	chr10	90735823	90863039
HTR7_chr10_90735823_90863039	0/0	t0029	2028	1	0	0	1	0	0	copy fasta	HTR7	chr10	90735823	90863039
HTR7_chr10_90735823_90863039	0/0	t0030	2028	1	0	0	1	0	0	copy fasta	HTR7	chr10	90735823	90863039
HTR7_chr10_90735823_90863039	0/0	t0031	2028	1	1	0	0	0	0	copy fasta	HTR7	chr10	90735823	90863039
HTRA1_chr10_122456553_122519907	1/1	t0001	649	353	85	69	144	16	37	copy fasta	HTRA1	chr10	122456553	122519907
HTRA1_chr10_122456553_122519907	0/0	t0002	649	4	1	3	0	0	0	copy fasta	HTRA1	chr10	122456553	122519907
HTRA1_chr10_122456553_122519907	0/0	t0003	649	2	0	0	2	0	0	copy fasta	HTRA1	chr10	122456553	122519907
HTRA1_chr10_122456553_122519907	0/0	t0004	649	1	0	0	0	0	1	copy fasta	HTRA1	chr10	122456553	122519907
HTRA1_chr10_122456553_122519907	0/0	t0005	649	1	1	0	0	0	0	copy fasta	HTRA1	chr10	122456553	122519907
HTRA1_chr10_122456553_122519907	0/0	t0006	649	1	1	0	0	0	0	copy fasta	HTRA1	chr10	122456553	122519907
HTRA2_chr2_74524933_74538319	1/1	t0001	409	373	79	72	182	8	30	copy fasta	HTRA2	chr2	74524933	74538319
HTRA2_chr2_74524933_74538319	0/0	t0002	409	18	18	0	0	0	0	copy fasta	HTRA2	chr2	74524933	74538319
HTRA2_chr2_74524933_74538319	0/0	t0003	409	1	1	0	0	0	0	copy fasta	HTRA2	chr2	74524933	74538319
HTRA3_chr4_8264754_8312098	1/1	t0001	1178	329	55	68	143	16	45	copy fasta	HTRA3	chr4	8264754	8312098
HTRA3_chr4_8264754_8312098	0/0	t0002	1178	34	25	2	7	0	0	copy fasta	HTRA3	chr4	8264754	8312098
HTRA3_chr4_8264754_8312098	0/0	t0003	1178	3	3	0	0	0	0	copy fasta	HTRA3	chr4	8264754	8312098
HTRA3_chr4_8264754_8312098	0/0	t0004	1178	2	2	0	0	0	0	copy fasta	HTRA3	chr4	8264754	8312098
HTRA3_chr4_8264754_8312098	0/0	t0005	1178	2	0	0	0	0	2	copy fasta	HTRA3	chr4	8264754	8312098
HTRA3_chr4_8264754_8312098	0/0	t0006	1178	2	0	0	2	0	0	copy fasta	HTRA3	chr4	8264754	8312098
HTRA3_chr4_8264754_8312098	0/0	t0007	1178	2	1	1	0	0	0	copy fasta	HTRA3	chr4	8264754	8312098
HTRA3_chr4_8264754_8312098	0/0	t0008	1178	1	1	0	0	0	0	copy fasta	HTRA3	chr4	8264754	8312098
HTRA3_chr4_8264754_8312098	0/0	t0009	1178	1	0	0	1	0	0	copy fasta	HTRA3	chr4	8264754	8312098
HTRA3_chr4_8264754_8312098	0/0	t0010	1178	1	1	0	0	0	0	copy fasta	HTRA3	chr4	8264754	8312098
HTRA3_chr4_8264754_8312098	0/0	t0011	1178	1	1	0	0	0	0	copy fasta	HTRA3	chr4	8264754	8312098
HTRA3_chr4_8264754_8312098	0/0	t0012	1178	1	1	0	0	0	0	copy fasta	HTRA3	chr4	8264754	8312098
HTRA3_chr4_8264754_8312098	0/0	t0013	1178	1	1	0	0	0	0	copy fasta	HTRA3	chr4	8264754	8312098
HTRA3_chr4_8264754_8312098	0/0	t0014	1178	1	0	0	1	0	0	copy fasta	HTRA3	chr4	8264754	8312098
HTRA3_chr4_8264754_8312098	0/0	t0015	1178	1	0	1	0	0	0	copy fasta	HTRA3	chr4	8264754	8312098