JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HTRA3_chr4_8264754_8312098	0/0	t0016	1178	1	1	0	0	0	0	copy fasta	HTRA3	chr4	8264754	8312098
HTRA3_chr4_8264754_8312098	0/0	t0017	1178	1	1	0	0	0	0	copy fasta	HTRA3	chr4	8264754	8312098
HTRA3_chr4_8264754_8312098	0/0	t0018	1178	1	0	0	1	0	0	copy fasta	HTRA3	chr4	8264754	8312098
HTRA3_chr4_8264754_8312098	0/0	t0019	1178	1	1	0	0	0	0	copy fasta	HTRA3	chr4	8264754	8312098
HTRA3_chr4_8264754_8312098	0/0	t0020	1178	1	0	0	1	0	0	copy fasta	HTRA3	chr4	8264754	8312098
HTRA3_chr4_8264754_8312098	0/0	t0021	1178	1	0	0	0	0	1	copy fasta	HTRA3	chr4	8264754	8312098
HTRA4_chr8_38969228_38993663	1/1	t0001	602	176	42	32	59	11	30	copy fasta	HTRA4	chr8	38969228	38993663
HTRA4_chr8_38969228_38993663	0/0	t0002	604	85	22	15	42	3	3	copy fasta	HTRA4	chr8	38969228	38993663
HTRA4_chr8_38969228_38993663	0/0	t0003	604	44	0	9	33	0	2	copy fasta	HTRA4	chr8	38969228	38993663
HTRA4_chr8_38969228_38993663	0/0	t0004	605	33	3	9	16	1	4	copy fasta	HTRA4	chr8	38969228	38993663
HTRA4_chr8_38969228_38993663	0/0	t0005	603	31	2	6	16	2	5	copy fasta	HTRA4	chr8	38969228	38993663
HTRA4_chr8_38969228_38993663	0/0	t0006	596	16	6	3	6	0	1	copy fasta	HTRA4	chr8	38969228	38993663
HTRA4_chr8_38969228_38993663	0/0	t0007	602	14	14	0	0	0	0	copy fasta	HTRA4	chr8	38969228	38993663
HTRA4_chr8_38969228_38993663	0/0	t0008	603	9	1	7	0	1	0	copy fasta	HTRA4	chr8	38969228	38993663
HTRA4_chr8_38969228_38993663	0/0	t0009	602	6	0	1	3	0	2	copy fasta	HTRA4	chr8	38969228	38993663
HTRA4_chr8_38969228_38993663	0/0	t0010	597	5	5	0	0	0	0	copy fasta	HTRA4	chr8	38969228	38993663
HTRA4_chr8_38969228_38993663	0/0	t0011	605	4	0	0	4	0	0	copy fasta	HTRA4	chr8	38969228	38993663
HTRA4_chr8_38969228_38993663	0/0	t0012	603	2	0	0	1	0	1	copy fasta	HTRA4	chr8	38969228	38993663
HTRA4_chr8_38969228_38993663	0/0	t0013	602	1	0	0	1	0	0	copy fasta	HTRA4	chr8	38969228	38993663
HTRA4_chr8_38969228_38993663	0/0	t0014	602	1	1	0	0	0	0	copy fasta	HTRA4	chr8	38969228	38993663
HTRA4_chr8_38969228_38993663	0/0	t0015	603	1	0	0	1	0	0	copy fasta	HTRA4	chr8	38969228	38993663
HTT_chr4_3069681_3248957	0/0	t0001	4047	124	22	23	67	5	7	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	t0002	4047	66	0	18	38	3	7	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	t0003	4063	43	27	8	2	1	5	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/1	t0004	4047	7	1	4	0	0	1	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	1/0	t0005	4044	4	3	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	t0006	4047	4	4	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	t0007	4063	3	3	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	t0008	4063	3	0	1	0	1	1	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	t0009	4047	3	1	2	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	t0010	4063	2	2	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	t0011	4063	2	1	1	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	t0012	4047	2	0	0	2	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	t0013	4047	2	0	0	2	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	t0014	4047	2	0	0	2	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	t0015	4047	2	2	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	t0016	4047	2	1	1	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	t0017	4047	2	0	1	0	0	1	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	t0018	4063	2	2	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	t0019	4047	2	0	2	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	t0020	4047	2	0	1	0	0	1	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	t0021	4047	1	0	0	1	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	t0022	4047	1	0	0	1	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	t0023	4063	1	1	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	t0024	4047	1	0	0	0	0	1	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	t0025	4047	1	0	1	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	t0026	4047	1	1	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	t0027	4047	1	0	0	1	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	t0028	4047	1	0	1	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	t0029	4047	1	1	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957