JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HTT_chr4_3069681_3248957	0/0	t0030	4047	1	1	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	t0031	4063	1	1	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	t0032	4047	1	1	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	t0033	4046	1	1	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	t0034	4046	1	1	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HTT_chr4_3069681_3248957	0/0	t0035	4046	1	1	0	0	0	0	copy fasta	HTT	chr4	3069681	3248957
HUNK_chr21_31868020_32009064	0/0	t0001	5537	72	18	13	31	2	8	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0002	5540	44	0	8	28	1	7	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0003	5541	41	0	4	28	2	7	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0004	5541	25	1	4	15	0	5	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0005	5539	13	12	1	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0006	5539	9	7	2	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0007	5549	7	3	0	4	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0008	5539	6	5	1	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0009	5541	6	0	5	0	0	1	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0010	5536	6	0	4	1	1	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0011	5539	5	5	0	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0012	5537	4	4	0	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0013	5537	4	1	2	0	0	1	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0014	5538	4	0	1	1	0	2	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0015	5536	4	4	0	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0016	5541	4	0	0	4	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0017	5547	3	3	0	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0018	5543	3	2	1	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0019	5538	3	0	0	3	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0020	5537	3	0	0	3	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0021	5540	3	0	1	0	1	1	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0022	5549	2	2	0	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0023	5547	2	2	0	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0024	5549	2	0	0	2	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0025	5543	2	2	0	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0026	5537	2	0	0	0	1	1	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/1	t0027	5537	2	0	1	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0028	5537	2	0	0	2	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0029	5537	2	2	0	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0030	5540	2	0	0	2	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0031	5539	1	1	0	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0032	5539	1	1	0	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0033	5539	1	1	0	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0034	5539	1	1	0	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0035	5537	1	1	0	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0036	5547	1	0	1	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0037	5539	1	1	0	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0038	5539	1	1	0	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0039	5541	1	0	0	0	1	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0040	5541	1	0	0	0	1	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0041	5536	1	0	1	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0042	5540	1	0	0	0	1	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0043	5540	1	0	1	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	1/0	t0044	5536	1	0	0	0	0	0	copy fasta	HUNK	chr21	31868020	32009064