JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HUNK_chr21_31868020_32009064	0/0	t0045	5539	1	1	0	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0046	5539	1	1	0	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0047	5549	1	0	0	1	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0048	5538	1	0	1	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0049	5549	1	0	0	1	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0050	5539	1	1	0	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0051	5539	1	1	0	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0052	5541	1	0	1	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0053	5541	1	1	0	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0054	5541	1	0	1	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0055	5540	1	1	0	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0056	5537	1	0	0	1	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0057	5540	1	0	0	0	1	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0058	5538	1	0	0	0	0	1	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0059	5536	1	1	0	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0060	5537	1	1	0	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0061	5537	1	0	0	1	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0062	5537	1	0	0	0	0	1	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0063	5537	1	0	1	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0064	5539	1	1	0	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0065	5537	1	1	0	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0066	5537	1	0	1	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0067	5537	1	1	0	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0068	5537	1	0	0	1	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0069	5537	1	1	0	0	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0070	5540	1	0	0	0	0	1	copy fasta	HUNK	chr21	31868020	32009064
HUNK_chr21_31868020_32009064	0/0	t0071	5540	1	0	0	1	0	0	copy fasta	HUNK	chr21	31868020	32009064
HUS1B_chr6_650939_662100	1/1	t0001	326	407	81	67	197	16	44	copy fasta	HUS1B	chr6	650939	662100
HUS1B_chr6_650939_662100	0/0	t0002	326	14	1	13	0	0	0	copy fasta	HUS1B	chr6	650939	662100
HUS1B_chr6_650939_662100	0/0	t0003	324	7	7	0	0	0	0	copy fasta	HUS1B	chr6	650939	662100
HUS1B_chr6_650939_662100	0/0	t0004	326	1	1	0	0	0	0	copy fasta	HUS1B	chr6	650939	662100
HUS1B_chr6_650939_662100	0/0	t0005	326	1	0	0	1	0	0	copy fasta	HUS1B	chr6	650939	662100
HUS1B_chr6_650939_662100	0/0	t0006	326	1	1	0	0	0	0	copy fasta	HUS1B	chr6	650939	662100
HUS1B_chr6_650939_662100	0/0	t0007	326	1	1	0	0	0	0	copy fasta	HUS1B	chr6	650939	662100
HUS1_chr7_47958288_47984615	1/0	t0001	2165	163	33	23	78	8	20	copy fasta	HUS1	chr7	47958288	47984615
HUS1_chr7_47958288_47984615	0/1	t0002	2166	152	32	29	72	5	13	copy fasta	HUS1	chr7	47958288	47984615
HUS1_chr7_47958288_47984615	0/0	t0003	2165	50	7	8	28	1	6	copy fasta	HUS1	chr7	47958288	47984615
HUS1_chr7_47958288_47984615	0/0	t0004	2165	12	12	0	0	0	0	copy fasta	HUS1	chr7	47958288	47984615
HUS1_chr7_47958288_47984615	0/0	t0005	2165	8	0	5	1	0	2	copy fasta	HUS1	chr7	47958288	47984615
HUS1_chr7_47958288_47984615	0/0	t0006	2164	6	6	0	0	0	0	copy fasta	HUS1	chr7	47958288	47984615
HUS1_chr7_47958288_47984615	0/0	t0007	2166	2	0	0	2	0	0	copy fasta	HUS1	chr7	47958288	47984615
HUS1_chr7_47958288_47984615	0/0	t0008	2166	2	0	2	0	0	0	copy fasta	HUS1	chr7	47958288	47984615
HUS1_chr7_47958288_47984615	0/0	t0009	2166	2	2	0	0	0	0	copy fasta	HUS1	chr7	47958288	47984615
HUS1_chr7_47958288_47984615	0/0	t0010	2167	2	0	0	2	0	0	copy fasta	HUS1	chr7	47958288	47984615
HUS1_chr7_47958288_47984615	0/0	t0011	2165	1	0	0	1	0	0	copy fasta	HUS1	chr7	47958288	47984615
HUS1_chr7_47958288_47984615	0/0	t0012	2165	1	1	0	0	0	0	copy fasta	HUS1	chr7	47958288	47984615
HUS1_chr7_47958288_47984615	0/0	t0013	2165	1	1	0	0	0	0	copy fasta	HUS1	chr7	47958288	47984615
HUS1_chr7_47958288_47984615	0/0	t0014	2165	1	0	0	1	0	0	copy fasta	HUS1	chr7	47958288	47984615
HUS1_chr7_47958288_47984615	0/0	t0015	2166	1	1	0	0	0	0	copy fasta	HUS1	chr7	47958288	47984615
HUS1_chr7_47958288_47984615	0/0	t0016	2165	1	0	1	0	0	0	copy fasta	HUS1	chr7	47958288	47984615