JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HUS1_chr7_47958288_47984615	0/0	t0017	2166	1	0	0	1	0	0	copy fasta	HUS1	chr7	47958288	47984615
HUS1_chr7_47958288_47984615	0/0	t0018	2166	1	0	0	0	0	1	copy fasta	HUS1	chr7	47958288	47984615
HUS1_chr7_47958288_47984615	0/0	t0019	2166	1	1	0	0	0	0	copy fasta	HUS1	chr7	47958288	47984615
HUS1_chr7_47958288_47984615	0/0	t0020	2165	1	1	0	0	0	0	copy fasta	HUS1	chr7	47958288	47984615
HUS1_chr7_47958288_47984615	0/0	t0021	2165	1	1	0	0	0	0	copy fasta	HUS1	chr7	47958288	47984615
HUWE1_chrX_53527096_53691719	0/0	t0001	1607	56	4	12	28	5	7	copy fasta	HUWE1	chrX	53527096	53691719
HUWE1_chrX_53527096_53691719	0/0	t0002	1618	55	3	10	28	3	11	copy fasta	HUWE1	chrX	53527096	53691719
HUWE1_chrX_53527096_53691719	1/0	t0003	1607	48	31	7	8	1	0	copy fasta	HUWE1	chrX	53527096	53691719
HUWE1_chrX_53527096_53691719	0/1	t0004	1618	26	1	4	18	0	2	copy fasta	HUWE1	chrX	53527096	53691719
HUWE1_chrX_53527096_53691719	0/0	t0005	1618	6	0	6	0	0	0	copy fasta	HUWE1	chrX	53527096	53691719
HUWE1_chrX_53527096_53691719	0/0	t0006	1596	5	0	2	0	0	3	copy fasta	HUWE1	chrX	53527096	53691719
HUWE1_chrX_53527096_53691719	0/0	t0007	1629	4	0	0	3	0	1	copy fasta	HUWE1	chrX	53527096	53691719
HUWE1_chrX_53527096_53691719	0/0	t0008	1608	2	1	1	0	0	0	copy fasta	HUWE1	chrX	53527096	53691719
HUWE1_chrX_53527096_53691719	0/0	t0009	1619	2	0	0	1	0	1	copy fasta	HUWE1	chrX	53527096	53691719
HUWE1_chrX_53527096_53691719	0/0	t0010	1585	1	0	0	0	0	1	copy fasta	HUWE1	chrX	53527096	53691719
HUWE1_chrX_53527096_53691719	0/0	t0011	1608	1	1	0	0	0	0	copy fasta	HUWE1	chrX	53527096	53691719
HUWE1_chrX_53527096_53691719	0/0	t0012	1608	1	0	0	0	1	0	copy fasta	HUWE1	chrX	53527096	53691719
HUWE1_chrX_53527096_53691719	0/0	t0013	1607	1	0	0	0	1	0	copy fasta	HUWE1	chrX	53527096	53691719
HUWE1_chrX_53527096_53691719	0/0	t0014	1606	1	0	0	1	0	0	copy fasta	HUWE1	chrX	53527096	53691719
HUWE1_chrX_53527096_53691719	0/0	t0015	1618	1	1	0	0	0	0	copy fasta	HUWE1	chrX	53527096	53691719
HUWE1_chrX_53527096_53691719	0/0	t0016	1619	1	0	0	1	0	0	copy fasta	HUWE1	chrX	53527096	53691719
HUWE1_chrX_53527096_53691719	0/0	t0017	1618	1	0	0	1	0	0	copy fasta	HUWE1	chrX	53527096	53691719
HUWE1_chrX_53527096_53691719	0/0	t0018	1640	1	0	0	1	0	0	copy fasta	HUWE1	chrX	53527096	53691719
HUWE1_chrX_53527096_53691719	0/0	t0019	1629	1	0	0	1	0	0	copy fasta	HUWE1	chrX	53527096	53691719
HVCN1_chr12_110643686_110694115	1/1	t0001	864	192	70	46	28	13	33	copy fasta	HVCN1	chr12	110643686	110694115
HVCN1_chr12_110643686_110694115	0/0	t0002	862	15	8	1	2	1	3	copy fasta	HVCN1	chr12	110643686	110694115
HVCN1_chr12_110643686_110694115	0/0	t0003	864	1	1	0	0	0	0	copy fasta	HVCN1	chr12	110643686	110694115
HVCN1_chr12_110643686_110694115	0/0	t0004	864	1	0	1	0	0	0	copy fasta	HVCN1	chr12	110643686	110694115
HVCN1_chr12_110643686_110694115	0/0	t0005	864	1	1	0	0	0	0	copy fasta	HVCN1	chr12	110643686	110694115
HYAL1_chr3_50294893_50308574	1/0	t0001	724	333	81	55	151	12	33	copy fasta	HYAL1	chr3	50294893	50308574
HYAL1_chr3_50294893_50308574	0/1	t0002	724	36	1	6	17	4	7	copy fasta	HYAL1	chr3	50294893	50308574
HYAL1_chr3_50294893_50308574	0/0	t0003	724	8	1	7	0	0	0	copy fasta	HYAL1	chr3	50294893	50308574
HYAL1_chr3_50294893_50308574	0/0	t0004	724	4	4	0	0	0	0	copy fasta	HYAL1	chr3	50294893	50308574
HYAL1_chr3_50294893_50308574	0/0	t0005	734	1	1	0	0	0	0	copy fasta	HYAL1	chr3	50294893	50308574
HYAL1_chr3_50294893_50308574	0/0	t0006	724	1	0	0	1	0	0	copy fasta	HYAL1	chr3	50294893	50308574
HYAL1_chr3_50294893_50308574	0/0	t0007	724	1	0	0	1	0	0	copy fasta	HYAL1	chr3	50294893	50308574
HYAL2_chr3_50312808_50327745	1/1	t0001	461	347	84	69	141	18	33	copy fasta	HYAL2	chr3	50312808	50327745
HYAL2_chr3_50312808_50327745	0/0	t0002	461	2	2	0	0	0	0	copy fasta	HYAL2	chr3	50312808	50327745
HYAL2_chr3_50312808_50327745	0/0	t0003	461	2	2	0	0	0	0	copy fasta	HYAL2	chr3	50312808	50327745
HYAL2_chr3_50312808_50327745	0/0	t0004	461	2	0	0	1	0	1	copy fasta	HYAL2	chr3	50312808	50327745
HYAL2_chr3_50312808_50327745	0/0	t0005	461	1	0	1	0	0	0	copy fasta	HYAL2	chr3	50312808	50327745
HYAL3_chr3_50287832_50304405	1/1	t0001	625	270	68	58	89	16	37	copy fasta	HYAL3	chr3	50287832	50304405
HYAL3_chr3_50287832_50304405	0/0	t0002	625	91	6	12	72	0	1	copy fasta	HYAL3	chr3	50287832	50304405
HYAL3_chr3_50287832_50304405	0/0	t0003	625	15	13	2	0	0	0	copy fasta	HYAL3	chr3	50287832	50304405
HYAL3_chr3_50287832_50304405	0/0	t0004	625	1	1	0	0	0	0	copy fasta	HYAL3	chr3	50287832	50304405
HYAL3_chr3_50287832_50304405	0/0	t0005	625	1	0	0	1	0	0	copy fasta	HYAL3	chr3	50287832	50304405
HYAL4_chr7_123840169_123882481	1/1	t0001	965	265	50	56	118	6	33	copy fasta	HYAL4	chr7	123840169	123882481
HYAL4_chr7_123840169_123882481	0/0	t0002	964	65	14	7	36	4	4	copy fasta	HYAL4	chr7	123840169	123882481
HYAL4_chr7_123840169_123882481	0/0	t0003	966	27	17	5	5	0	0	copy fasta	HYAL4	chr7	123840169	123882481
HYAL4_chr7_123840169_123882481	0/0	t0004	965	16	4	5	0	2	5	copy fasta	HYAL4	chr7	123840169	123882481