JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HYAL4_chr7_123840169_123882481	0/0	t0005	963	6	2	0	4	0	0	copy fasta	HYAL4	chr7	123840169	123882481
HYAL4_chr7_123840169_123882481	0/0	t0006	963	4	4	0	0	0	0	copy fasta	HYAL4	chr7	123840169	123882481
HYAL4_chr7_123840169_123882481	0/0	t0007	964	3	0	0	3	0	0	copy fasta	HYAL4	chr7	123840169	123882481
HYAL4_chr7_123840169_123882481	0/0	t0008	966	3	3	0	0	0	0	copy fasta	HYAL4	chr7	123840169	123882481
HYAL4_chr7_123840169_123882481	0/0	t0009	953	2	2	0	0	0	0	copy fasta	HYAL4	chr7	123840169	123882481
HYAL4_chr7_123840169_123882481	0/0	t0010	964	1	0	0	1	0	0	copy fasta	HYAL4	chr7	123840169	123882481
HYAL4_chr7_123840169_123882481	0/0	t0011	963	1	0	0	1	0	0	copy fasta	HYAL4	chr7	123840169	123882481
HYAL4_chr7_123840169_123882481	0/0	t0012	966	1	0	1	0	0	0	copy fasta	HYAL4	chr7	123840169	123882481
HYCC1_chr7_22929211_23019130	0/0	t0001	11599	31	1	3	24	1	2	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0002	11613	28	8	8	4	5	3	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0003	11614	26	2	6	16	0	2	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0004	11599	24	0	3	21	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0005	11599	24	0	2	17	1	4	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0006	11615	19	1	2	14	1	1	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0007	11601	18	0	3	15	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0008	11599	14	0	9	0	2	3	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0009	11616	13	1	0	11	0	1	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/1	t0010	11599	10	3	4	0	0	2	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0011	11605	10	5	4	0	0	1	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0012	11601	9	9	0	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0013	11604	9	3	1	4	0	1	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0014	11605	7	0	0	0	0	7	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0015	11610	6	0	4	0	1	1	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0016	11617	6	2	2	2	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0017	11602	4	0	0	4	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0018	11587	4	0	0	4	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0019	11605	3	2	1	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0020	11612	3	2	1	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0021	11602	3	3	0	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0022	11606	3	1	1	0	0	1	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0023	11587	3	0	0	3	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0024	11593	2	1	1	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0025	11617	2	0	0	2	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0026	11600	2	0	0	0	0	2	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0027	11615	2	0	2	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0028	11604	2	0	0	2	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0029	11613	2	2	0	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0030	11600	2	2	0	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0031	11614	2	0	0	2	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0032	11608	2	1	1	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0033	11606	2	2	0	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0034	11610	2	2	0	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0035	11604	2	0	1	0	1	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0036	11606	2	2	0	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0037	11600	2	0	0	1	0	1	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0038	11600	2	0	0	2	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0039	11599	2	0	1	0	0	1	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0040	11600	2	0	1	1	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0041	11604	2	0	0	2	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0042	11593	1	1	0	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130