JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HYCC1_chr7_22929211_23019130	0/0	t0043	11592	1	1	0	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0044	11613	1	0	0	0	1	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0045	11607	1	1	0	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0046	11618	1	0	0	1	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0047	11619	1	0	0	1	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0048	11618	1	0	0	1	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0049	11603	1	0	0	1	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0050	11598	1	0	0	1	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0051	11599	1	0	0	1	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0052	11602	1	0	0	1	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0053	11608	1	0	0	0	0	1	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0054	11609	1	1	0	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0055	11609	1	0	0	0	0	1	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0056	11615	1	0	1	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0057	11614	1	0	1	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0058	11615	1	0	0	1	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0059	11606	1	0	1	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0060	11609	1	1	0	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0061	11615	1	0	0	1	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0062	11613	1	0	0	1	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	1/0	t0063	11613	1	0	0	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0064	11597	1	0	0	0	0	1	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0065	11606	1	1	0	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0066	11613	1	0	0	0	0	1	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0067	11605	1	1	0	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0068	11605	1	1	0	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0069	11606	1	1	0	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0070	11605	1	1	0	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0071	11603	1	0	1	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0072	11615	1	0	0	1	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0073	11598	1	0	0	1	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0074	11605	1	1	0	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0075	11613	1	1	0	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0076	11614	1	1	0	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0077	11613	1	1	0	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0078	11609	1	1	0	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0079	11613	1	1	0	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0080	11608	1	1	0	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0081	11608	1	1	0	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0082	11598	1	1	0	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0083	11605	1	0	0	0	0	1	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0084	11604	1	0	1	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0085	11601	1	1	0	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0086	11602	1	0	0	0	0	1	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0087	11605	1	0	0	0	0	1	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0088	11602	1	0	0	1	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0089	11605	1	1	0	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0090	11601	1	0	1	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0091	11607	1	1	0	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0092	11608	1	1	0	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130