JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HYCC1_chr7_22929211_23019130	0/0	t0093	11609	1	1	0	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0094	11604	1	0	0	1	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0095	11607	1	1	0	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0096	11604	1	0	0	0	0	1	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0097	11608	1	1	0	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0098	11601	1	1	0	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0099	11606	1	0	1	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0100	11601	1	0	0	0	0	1	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0101	11602	1	0	1	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0102	11604	1	0	0	1	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0103	11599	1	0	0	1	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0104	11602	1	0	0	1	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0105	11599	1	0	0	1	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0106	11598	1	0	0	1	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0107	11600	1	0	1	0	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0108	11600	1	0	0	1	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0109	11599	1	0	0	1	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0110	11600	1	0	0	1	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0111	11599	1	0	0	1	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0112	11605	1	0	0	0	1	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0113	11599	1	0	0	1	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC1_chr7_22929211_23019130	0/0	t0114	11614	1	0	0	1	0	0	copy fasta	HYCC1	chr7	22929211	23019130
HYCC2_chr2_200968718_201076671	1/1	t0001	7743	44	9	17	11	2	3	copy fasta	HYCC2	chr2	200968718	201076671
HYCC2_chr2_200968718_201076671	0/0	t0002	7741	16	3	2	5	1	5	copy fasta	HYCC2	chr2	200968718	201076671
HYCC2_chr2_200968718_201076671	0/0	t0003	7738	14	14	0	0	0	0	copy fasta	HYCC2	chr2	200968718	201076671
HYCC2_chr2_200968718_201076671	0/0	t0004	7738	12	8	2	1	0	1	copy fasta	HYCC2	chr2	200968718	201076671
HYCC2_chr2_200968718_201076671	0/0	t0005	7733	9	9	0	0	0	0	copy fasta	HYCC2	chr2	200968718	201076671
HYCC2_chr2_200968718_201076671	0/0	t0006	7738	8	0	5	1	2	0	copy fasta	HYCC2	chr2	200968718	201076671
HYCC2_chr2_200968718_201076671	0/0	t0007	7744	8	3	3	0	1	1	copy fasta	HYCC2	chr2	200968718	201076671
HYCC2_chr2_200968718_201076671	0/0	t0008	7740	8	5	3	0	0	0	copy fasta	HYCC2	chr2	200968718	201076671
HYCC2_chr2_200968718_201076671	0/0	t0009	7745	6	6	0	0	0	0	copy fasta	HYCC2	chr2	200968718	201076671
HYCC2_chr2_200968718_201076671	0/0	t0010	7739	4	2	1	0	1	0	copy fasta	HYCC2	chr2	200968718	201076671
HYCC2_chr2_200968718_201076671	0/0	t0011	7737	4	4	0	0	0	0	copy fasta	HYCC2	chr2	200968718	201076671
HYCC2_chr2_200968718_201076671	0/0	t0012	7742	3	2	0	0	0	1	copy fasta	HYCC2	chr2	200968718	201076671
HYCC2_chr2_200968718_201076671	0/0	t0013	7740	3	0	1	0	1	1	copy fasta	HYCC2	chr2	200968718	201076671
HYCC2_chr2_200968718_201076671	0/0	t0014	7736	3	3	0	0	0	0	copy fasta	HYCC2	chr2	200968718	201076671
HYCC2_chr2_200968718_201076671	0/0	t0015	7743	2	0	2	0	0	0	copy fasta	HYCC2	chr2	200968718	201076671
HYCC2_chr2_200968718_201076671	0/0	t0016	7743	2	0	0	2	0	0	copy fasta	HYCC2	chr2	200968718	201076671
HYCC2_chr2_200968718_201076671	0/0	t0017	7740	2	2	0	0	0	0	copy fasta	HYCC2	chr2	200968718	201076671
HYCC2_chr2_200968718_201076671	0/0	t0018	7745	1	0	0	1	0	0	copy fasta	HYCC2	chr2	200968718	201076671
HYCC2_chr2_200968718_201076671	0/0	t0019	7737	1	1	0	0	0	0	copy fasta	HYCC2	chr2	200968718	201076671
HYCC2_chr2_200968718_201076671	0/0	t0020	7741	1	0	0	1	0	0	copy fasta	HYCC2	chr2	200968718	201076671
HYCC2_chr2_200968718_201076671	0/0	t0021	7731	1	1	0	0	0	0	copy fasta	HYCC2	chr2	200968718	201076671
HYCC2_chr2_200968718_201076671	0/0	t0022	7737	1	0	0	0	0	1	copy fasta	HYCC2	chr2	200968718	201076671
HYCC2_chr2_200968718_201076671	0/0	t0023	7739	1	1	0	0	0	0	copy fasta	HYCC2	chr2	200968718	201076671
HYCC2_chr2_200968718_201076671	0/0	t0024	7738	1	1	0	0	0	0	copy fasta	HYCC2	chr2	200968718	201076671
HYCC2_chr2_200968718_201076671	0/0	t0025	7736	1	1	0	0	0	0	copy fasta	HYCC2	chr2	200968718	201076671
HYCC2_chr2_200968718_201076671	0/0	t0026	7741	1	1	0	0	0	0	copy fasta	HYCC2	chr2	200968718	201076671
HYCC2_chr2_200968718_201076671	0/0	t0027	7739	1	1	0	0	0	0	copy fasta	HYCC2	chr2	200968718	201076671
HYCC2_chr2_200968718_201076671	0/0	t0028	7739	1	1	0	0	0	0	copy fasta	HYCC2	chr2	200968718	201076671