JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HYCC2_chr2_200968718_201076671	0/0	t0029	7738	1	0	0	1	0	0	copy fasta	HYCC2	chr2	200968718	201076671
HYCC2_chr2_200968718_201076671	0/0	t0030	7743	1	0	0	1	0	0	copy fasta	HYCC2	chr2	200968718	201076671
HYCC2_chr2_200968718_201076671	0/0	t0031	7741	1	1	0	0	0	0	copy fasta	HYCC2	chr2	200968718	201076671
HYCC2_chr2_200968718_201076671	0/0	t0032	7741	1	0	0	0	0	1	copy fasta	HYCC2	chr2	200968718	201076671
HYCC2_chr2_200968718_201076671	0/0	t0033	7740	1	0	0	0	0	1	copy fasta	HYCC2	chr2	200968718	201076671
HYCC2_chr2_200968718_201076671	0/0	t0034	7746	1	1	0	0	0	0	copy fasta	HYCC2	chr2	200968718	201076671
HYCC2_chr2_200968718_201076671	0/0	t0035	7745	1	0	1	0	0	0	copy fasta	HYCC2	chr2	200968718	201076671
HYCC2_chr2_200968718_201076671	0/0	t0036	7746	1	0	1	0	0	0	copy fasta	HYCC2	chr2	200968718	201076671
HYCC2_chr2_200968718_201076671	0/0	t0037	7745	1	0	0	0	1	0	copy fasta	HYCC2	chr2	200968718	201076671
HYCC2_chr2_200968718_201076671	0/0	t0038	7745	1	1	0	0	0	0	copy fasta	HYCC2	chr2	200968718	201076671
HYCC2_chr2_200968718_201076671	0/0	t0039	7745	1	0	0	0	0	1	copy fasta	HYCC2	chr2	200968718	201076671
HYCC2_chr2_200968718_201076671	0/0	t0040	7738	1	1	0	0	0	0	copy fasta	HYCC2	chr2	200968718	201076671
HYCC2_chr2_200968718_201076671	0/0	t0041	7737	1	1	0	0	0	0	copy fasta	HYCC2	chr2	200968718	201076671
HYCC2_chr2_200968718_201076671	0/0	t0042	7743	1	0	0	0	1	0	copy fasta	HYCC2	chr2	200968718	201076671
HYCC2_chr2_200968718_201076671	0/0	t0043	7736	1	1	0	0	0	0	copy fasta	HYCC2	chr2	200968718	201076671
HYCC2_chr2_200968718_201076671	0/0	t0044	7743	1	1	0	0	0	0	copy fasta	HYCC2	chr2	200968718	201076671
HYCC2_chr2_200968718_201076671	0/0	t0045	7738	1	1	0	0	0	0	copy fasta	HYCC2	chr2	200968718	201076671
HYDIN_chr16_70797084_71235722	1/1	t0001	5681	54	14	13	13	1	11	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	t0002	5681	17	0	7	9	1	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	t0003	5681	14	2	3	4	2	3	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	t0004	5669	12	0	2	8	1	1	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	t0005	5669	10	10	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	t0006	5681	6	5	1	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	t0007	5678	6	6	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	t0008	5681	5	5	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	t0009	5678	5	5	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	t0010	5678	5	5	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	t0011	5681	4	4	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	t0012	5669	3	2	1	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	t0013	5681	3	3	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	t0014	5669	3	0	2	1	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	t0015	5681	2	1	1	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	t0016	5681	2	2	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	t0017	5681	2	2	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	t0018	5669	1	0	0	0	0	1	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	t0019	5681	1	0	0	0	0	1	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	t0020	5681	1	0	1	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	t0021	5669	1	0	1	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	t0022	5669	1	0	0	0	0	1	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	t0023	5669	1	0	1	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	t0024	5669	1	0	0	1	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	t0025	5681	1	0	0	0	0	1	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	t0026	5681	1	0	1	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	t0027	5681	1	1	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	t0028	5681	1	0	1	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	t0029	5681	1	0	0	0	0	1	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	t0030	5681	1	0	1	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	t0031	5681	1	1	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	t0032	5669	1	1	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	t0033	5681	1	0	1	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722