JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HYDIN_chr16_70797084_71235722	0/0	t0034	5681	1	1	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	t0035	5681	1	1	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	t0036	5681	1	0	0	0	1	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	t0037	5681	1	0	1	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYDIN_chr16_70797084_71235722	0/0	t0038	5678	1	1	0	0	0	0	copy fasta	HYDIN	chr16	70797084	71235722
HYI_chr1_43445989_43458931	1/0	t0001	388	368	73	67	174	17	36	copy fasta	HYI	chr1	43445989	43458931
HYI_chr1_43445989_43458931	0/0	t0002	395	18	4	0	11	0	3	copy fasta	HYI	chr1	43445989	43458931
HYI_chr1_43445989_43458931	0/1	t0003	388	11	2	4	0	1	3	copy fasta	HYI	chr1	43445989	43458931
HYI_chr1_43445989_43458931	0/0	t0004	402	6	5	0	1	0	0	copy fasta	HYI	chr1	43445989	43458931
HYI_chr1_43445989_43458931	0/0	t0005	388	6	6	0	0	0	0	copy fasta	HYI	chr1	43445989	43458931
HYI_chr1_43445989_43458931	0/0	t0006	381	5	2	0	3	0	0	copy fasta	HYI	chr1	43445989	43458931
HYI_chr1_43445989_43458931	0/0	t0007	388	2	2	0	0	0	0	copy fasta	HYI	chr1	43445989	43458931
HYI_chr1_43445989_43458931	0/0	t0008	388	2	0	0	2	0	0	copy fasta	HYI	chr1	43445989	43458931
HYI_chr1_43445989_43458931	0/0	t0009	409	1	1	0	0	0	0	copy fasta	HYI	chr1	43445989	43458931
HYI_chr1_43445989_43458931	0/0	t0010	388	1	0	1	0	0	0	copy fasta	HYI	chr1	43445989	43458931
HYI_chr1_43445989_43458931	0/0	t0011	388	1	0	0	1	0	0	copy fasta	HYI	chr1	43445989	43458931
HYI_chr1_43445989_43458931	0/0	t0012	388	1	1	0	0	0	0	copy fasta	HYI	chr1	43445989	43458931
HYKK_chr15_78502577_78541645	0/0	t0001	3078	78	8	15	38	2	15	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0002	3078	46	10	15	12	2	7	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0003	3082	33	5	14	3	4	7	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0004	3080	31	0	0	31	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0005	3080	30	2	3	22	0	3	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0006	3082	13	11	2	0	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0007	3077	13	0	1	9	1	2	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0008	3078	9	9	0	0	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0009	3081	7	0	0	7	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0010	3078	6	0	0	2	0	4	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0011	3079	6	0	3	2	0	1	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0012	3074	6	0	1	5	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0013	3072	6	0	0	6	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	1/0	t0014	3076	6	4	1	0	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0015	3081	5	0	0	5	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0016	3070	5	5	0	0	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0017	3078	5	0	0	5	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0018	3080	4	0	0	4	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0019	3078	4	4	0	0	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0020	3078	4	0	0	4	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0021	3080	4	3	1	0	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0022	3072	4	4	0	0	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0023	3081	4	1	0	3	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0024	3082	4	0	0	4	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0025	3078	3	0	0	3	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0026	3070	3	3	0	0	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0027	3075	3	3	0	0	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0028	3080	3	0	0	3	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0029	3076	3	0	0	3	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/1	t0030	3081	3	1	0	1	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0031	3078	2	2	0	0	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0032	3079	2	0	0	1	0	1	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0033	3079	2	0	0	2	0	0	copy fasta	HYKK	chr15	78502577	78541645