JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HYKK_chr15_78502577_78541645	0/0	t0034	3077	2	1	0	0	1	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0035	3078	2	0	2	0	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0036	3077	2	0	1	1	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0037	3075	2	2	0	0	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0038	3079	2	0	0	1	0	1	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0039	3079	2	0	1	0	0	1	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0040	3080	2	0	0	2	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0041	3082	2	0	1	0	1	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0042	3080	1	0	0	1	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0043	3078	1	0	0	0	0	1	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0044	3074	1	0	1	0	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0045	3082	1	0	0	1	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0046	3075	1	0	0	1	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0047	3070	1	1	0	0	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0048	3071	1	1	0	0	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0049	3079	1	0	0	1	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0050	3076	1	0	1	0	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0051	3071	1	1	0	0	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0052	3069	1	1	0	0	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0053	3081	1	0	0	1	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0054	3079	1	1	0	0	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0055	3078	1	0	0	1	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0056	3078	1	0	1	0	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0057	3082	1	0	0	1	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0058	3078	1	1	0	0	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0059	3083	1	0	0	1	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0060	3078	1	1	0	0	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0061	3076	1	0	0	1	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0062	3080	1	1	0	0	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0063	3070	1	1	0	0	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0064	3080	1	1	0	0	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0065	3076	1	1	0	0	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0066	3077	1	0	0	1	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0067	3075	1	0	0	1	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0068	3079	1	1	0	0	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0069	3071	1	0	0	1	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0070	3080	1	0	0	1	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0071	3084	1	0	0	1	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0072	3080	1	0	0	1	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0073	3085	1	0	0	1	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0074	3083	1	0	0	0	0	1	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0075	3081	1	0	1	0	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0076	3081	1	1	0	0	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0077	3086	1	0	1	0	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0078	3084	1	1	0	0	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0079	3076	1	0	0	1	0	0	copy fasta	HYKK	chr15	78502577	78541645
HYKK_chr15_78502577_78541645	0/0	t0080	3082	1	0	0	0	1	0	copy fasta	HYKK	chr15	78502577	78541645
HYLS1_chr11_125882668_125905646	0/1	t0001	554	262	51	46	123	8	33	copy fasta	HYLS1	chr11	125882668	125905646
HYLS1_chr11_125882668_125905646	1/0	t0002	552	87	31	9	37	3	6	copy fasta	HYLS1	chr11	125882668	125905646
HYLS1_chr11_125882668_125905646	0/0	t0003	554	77	12	17	39	2	7	copy fasta	HYLS1	chr11	125882668	125905646