JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HYLS1_chr11_125882668_125905646	0/0	t0004	554	3	0	2	0	1	0	copy fasta	HYLS1	chr11	125882668	125905646
HYLS1_chr11_125882668_125905646	0/0	t0005	554	3	0	0	3	0	0	copy fasta	HYLS1	chr11	125882668	125905646
HYLS1_chr11_125882668_125905646	0/0	t0006	552	2	2	0	0	0	0	copy fasta	HYLS1	chr11	125882668	125905646
HYLS1_chr11_125882668_125905646	0/0	t0007	554	1	0	0	1	0	0	copy fasta	HYLS1	chr11	125882668	125905646
HYLS1_chr11_125882668_125905646	0/0	t0008	554	1	0	0	1	0	0	copy fasta	HYLS1	chr11	125882668	125905646
HYOU1_chr11_119039188_119062205	0/1	t0001	1599	130	34	31	45	4	15	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	t0002	1599	88	10	14	49	4	11	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	t0003	1599	69	0	4	50	4	11	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	t0004	1599	38	14	4	18	0	2	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	1/0	t0005	1599	17	7	4	1	4	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	t0006	1600	8	6	1	0	0	1	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	t0007	1600	8	2	3	2	0	1	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	t0008	1599	8	8	0	0	0	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	t0009	1599	7	5	2	0	0	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	t0010	1600	6	4	0	2	0	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	t0011	1600	5	3	0	2	0	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	t0012	1599	5	0	0	5	0	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	t0013	1599	5	0	0	5	0	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	t0014	1597	3	0	2	0	0	1	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	t0015	1602	3	0	0	3	0	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	t0016	1599	2	2	0	0	0	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	t0017	1600	2	0	0	2	0	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	t0018	1600	2	2	0	0	0	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	t0019	1599	1	0	0	1	0	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	t0020	1599	1	1	0	0	0	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	t0021	1599	1	0	0	1	0	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	t0022	1599	1	1	0	0	0	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	t0023	1599	1	1	0	0	0	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	t0024	1599	1	0	0	1	0	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	t0025	1600	1	0	1	0	0	0	copy fasta	HYOU1	chr11	119039188	119062205
HYOU1_chr11_119039188_119062205	0/0	t0026	1599	1	0	0	1	0	0	copy fasta	HYOU1	chr11	119039188	119062205
HYPK_chr15_43795599_43809427	0/1	t0001	2645	158	14	40	73	5	25	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0002	2646	18	14	1	0	0	3	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0003	2659	15	2	3	10	0	0	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0004	2646	14	6	3	0	4	1	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0005	2661	11	5	1	4	1	0	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0006	2660	11	0	4	4	0	3	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0007	2659	11	4	0	7	0	0	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0008	2658	10	7	1	1	0	1	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0009	2646	9	1	2	6	0	0	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	1/0	t0010	2646	7	6	0	0	0	0	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0011	2642	7	0	0	7	0	0	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0012	2642	6	5	1	0	0	0	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0013	2658	6	1	1	2	0	2	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0014	2660	5	1	0	4	0	0	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0015	2647	5	5	0	0	0	0	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0016	2644	5	0	0	4	1	0	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0017	2641	4	0	0	4	0	0	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0018	2643	4	0	1	3	0	0	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0019	2662	3	1	1	1	0	0	copy fasta	HYPK	chr15	43795599	43809427