JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
HYPK_chr15_43795599_43809427	0/0	t0020	2657	3	2	0	1	0	0	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0021	2647	3	1	0	0	0	2	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0022	2643	3	3	0	0	0	0	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0023	2644	3	0	0	3	0	0	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0024	2647	2	0	0	2	0	0	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0025	2642	2	0	0	2	0	0	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0026	2645	2	0	0	2	0	0	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0027	2645	1	1	0	0	0	0	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0028	2666	1	1	0	0	0	0	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0029	2646	1	0	0	0	0	1	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0030	2645	1	0	1	0	0	0	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0031	2665	1	1	0	0	0	0	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0032	2663	1	1	0	0	0	0	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0033	2664	1	1	0	0	0	0	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0034	2661	1	0	0	1	0	0	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0035	2661	1	0	0	1	0	0	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0036	2660	1	0	0	1	0	0	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0037	2660	1	0	0	1	0	0	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0038	2659	1	0	0	1	0	0	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0039	2658	1	1	0	0	0	0	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0040	2670	1	0	0	1	0	0	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0041	2659	1	0	0	1	0	0	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0042	2655	1	1	0	0	0	0	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0043	2653	1	1	0	0	0	0	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0044	2646	1	1	0	0	0	0	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0045	2645	1	0	1	0	0	0	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0046	2645	1	0	0	1	0	0	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0047	2645	1	0	0	0	1	0	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0048	2645	1	1	0	0	0	0	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0049	2646	1	0	0	1	0	0	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0050	2645	1	1	0	0	0	0	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0051	2645	1	0	0	1	0	0	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0052	2643	1	0	0	1	0	0	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0053	2645	1	0	1	0	0	0	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0054	2644	1	0	0	1	0	0	copy fasta	HYPK	chr15	43795599	43809427
HYPK_chr15_43795599_43809427	0/0	t0055	2645	1	1	0	0	0	0	copy fasta	HYPK	chr15	43795599	43809427
IAH1_chr2_9469551_9494742	1/0	t0001	1430	96	1	12	65	4	13	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/1	t0002	1428	31	7	10	3	6	4	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0003	1429	30	6	2	22	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0004	1431	23	1	8	8	2	4	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0005	1429	11	1	3	0	0	7	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0006	1430	11	1	10	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0007	1429	9	0	1	4	0	4	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0008	1431	8	1	1	5	1	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0009	1430	8	0	5	0	1	2	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0010	1428	6	5	0	1	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0011	1428	5	4	1	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0012	1432	5	0	0	4	0	1	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0013	1428	5	1	4	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0014	1428	5	3	1	0	0	1	copy fasta	IAH1	chr2	9469551	9494742