JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IAH1_chr2_9469551_9494742	0/0	t0015	1445	4	4	0	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0016	1430	3	3	0	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0017	1429	3	1	0	1	1	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0018	1433	3	3	0	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0019	1429	3	2	1	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0020	1444	3	3	0	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0021	1429	3	3	0	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0022	1428	3	3	0	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0023	1429	2	1	0	1	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0024	1429	2	0	1	1	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0025	1430	2	2	0	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0026	1432	2	1	0	1	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0027	1430	2	2	0	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0028	1444	2	1	1	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0029	1428	2	2	0	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0030	1430	2	0	0	1	0	1	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0031	1443	2	2	0	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0032	1448	2	2	0	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0033	1429	2	0	1	0	1	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0034	1430	2	0	2	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0035	1429	1	1	0	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0036	1428	1	0	0	0	1	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0037	1436	1	1	0	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0038	1431	1	0	0	1	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0039	1431	1	0	0	1	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0040	1427	1	0	1	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0041	1428	1	0	0	0	0	1	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0042	1425	1	1	0	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0043	1431	1	1	0	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0044	1429	1	1	0	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0045	1435	1	0	1	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0046	1444	1	1	0	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0047	1445	1	1	0	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0048	1446	1	1	0	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0049	1449	1	1	0	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0050	1446	1	1	0	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0051	1450	1	0	1	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0052	1455	1	1	0	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0053	1465	1	1	0	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0054	1426	1	1	0	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0055	1431	1	0	1	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0056	1430	1	1	0	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0057	1428	1	1	0	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0058	1431	1	0	0	1	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0059	1430	1	0	0	1	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0060	1442	1	1	0	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0061	1446	1	1	0	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0062	1451	1	0	1	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0063	1446	1	1	0	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0064	1428	1	1	0	0	0	0	copy fasta	IAH1	chr2	9469551	9494742