JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IAH1_chr2_9469551_9494742	0/0	t0065	1429	1	1	0	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0066	1430	1	1	0	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0067	1428	1	1	0	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0068	1432	1	1	0	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0069	1430	1	1	0	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0070	1429	1	0	1	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0071	1431	1	0	1	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0072	1430	1	0	1	0	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0073	1429	1	0	0	0	1	0	copy fasta	IAH1	chr2	9469551	9494742
IAH1_chr2_9469551_9494742	0/0	t0074	1430	1	0	0	1	0	0	copy fasta	IAH1	chr2	9469551	9494742
IAPP_chr12_21367902_21384980	1/0	t0001	1673	356	69	58	176	15	37	copy fasta	IAPP	chr12	21367902	21384980
IAPP_chr12_21367902_21384980	0/0	t0002	1673	27	6	5	12	0	4	copy fasta	IAPP	chr12	21367902	21384980
IAPP_chr12_21367902_21384980	0/0	t0003	1673	11	7	2	0	0	2	copy fasta	IAPP	chr12	21367902	21384980
IAPP_chr12_21367902_21384980	0/1	t0004	1673	7	0	3	0	1	2	copy fasta	IAPP	chr12	21367902	21384980
IAPP_chr12_21367902_21384980	0/0	t0005	1673	6	4	2	0	0	0	copy fasta	IAPP	chr12	21367902	21384980
IAPP_chr12_21367902_21384980	0/0	t0006	1673	6	0	0	5	0	1	copy fasta	IAPP	chr12	21367902	21384980
IAPP_chr12_21367902_21384980	0/0	t0007	1673	3	0	0	3	0	0	copy fasta	IAPP	chr12	21367902	21384980
IAPP_chr12_21367902_21384980	0/0	t0008	1673	1	1	0	0	0	0	copy fasta	IAPP	chr12	21367902	21384980
IAPP_chr12_21367902_21384980	0/0	t0009	1673	1	0	1	0	0	0	copy fasta	IAPP	chr12	21367902	21384980
IAPP_chr12_21367902_21384980	0/0	t0010	1673	1	0	0	1	0	0	copy fasta	IAPP	chr12	21367902	21384980
IAPP_chr12_21367902_21384980	0/0	t0011	1673	1	0	1	0	0	0	copy fasta	IAPP	chr12	21367902	21384980
IAPP_chr12_21367902_21384980	0/0	t0012	1673	1	0	0	1	0	0	copy fasta	IAPP	chr12	21367902	21384980
IAPP_chr12_21367902_21384980	0/0	t0013	1673	1	1	0	0	0	0	copy fasta	IAPP	chr12	21367902	21384980
IARS1_chr9_92205207_92298697	1/1	t0001	695	260	61	48	106	12	31	copy fasta	IARS1	chr9	92205207	92298697
IARS1_chr9_92205207_92298697	0/0	t0002	695	36	7	10	11	3	5	copy fasta	IARS1	chr9	92205207	92298697
IARS1_chr9_92205207_92298697	0/0	t0003	695	19	1	3	10	1	4	copy fasta	IARS1	chr9	92205207	92298697
IARS1_chr9_92205207_92298697	0/0	t0004	696	13	11	2	0	0	0	copy fasta	IARS1	chr9	92205207	92298697
IARS1_chr9_92205207_92298697	0/0	t0005	695	5	5	0	0	0	0	copy fasta	IARS1	chr9	92205207	92298697
IARS1_chr9_92205207_92298697	0/0	t0006	695	1	0	1	0	0	0	copy fasta	IARS1	chr9	92205207	92298697
IARS1_chr9_92205207_92298697	0/0	t0007	695	1	0	0	1	0	0	copy fasta	IARS1	chr9	92205207	92298697
IARS1_chr9_92205207_92298697	0/0	t0008	695	1	1	0	0	0	0	copy fasta	IARS1	chr9	92205207	92298697
IARS1_chr9_92205207_92298697	0/0	t0009	695	1	1	0	0	0	0	copy fasta	IARS1	chr9	92205207	92298697
IARS1_chr9_92205207_92298697	0/0	t0010	695	1	1	0	0	0	0	copy fasta	IARS1	chr9	92205207	92298697
IARS2_chr1_220089132_220153041	1/1	t0001	492	301	86	48	125	11	29	copy fasta	IARS2	chr1	220089132	220153041
IARS2_chr1_220089132_220153041	0/0	t0002	492	56	0	14	34	3	5	copy fasta	IARS2	chr1	220089132	220153041
IARS2_chr1_220089132_220153041	0/0	t0003	495	6	0	0	6	0	0	copy fasta	IARS2	chr1	220089132	220153041
IARS2_chr1_220089132_220153041	0/0	t0004	492	1	0	0	1	0	0	copy fasta	IARS2	chr1	220089132	220153041
IARS2_chr1_220089132_220153041	0/0	t0005	492	1	0	0	0	0	1	copy fasta	IARS2	chr1	220089132	220153041
IARS2_chr1_220089132_220153041	0/0	t0006	492	1	0	0	0	0	1	copy fasta	IARS2	chr1	220089132	220153041
IBA57_chr1_228160804_228187257	0/0	t0001	6751	42	6	7	17	1	11	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0002	6752	29	0	13	4	4	8	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0003	6752	22	1	6	10	3	2	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0004	6752	19	7	1	10	0	1	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0005	6756	18	6	3	6	2	1	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0006	6758	11	0	8	3	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0007	6751	10	0	2	7	0	1	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0008	6753	8	1	3	4	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0009	6756	8	0	0	8	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/1	t0010	6757	7	1	4	1	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0011	6751	7	3	1	3	0	0	copy fasta	IBA57	chr1	228160804	228187257