JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IBA57_chr1_228160804_228187257	0/0	t0112	6759	1	1	0	0	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0113	6759	1	1	0	0	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0114	6759	1	0	0	1	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0115	6759	1	0	0	0	0	1	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0116	6756	1	1	0	0	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0117	6753	1	0	0	1	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0118	6752	1	0	0	1	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0119	6753	1	0	0	1	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0120	6758	1	0	0	1	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0121	6758	1	0	0	1	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0122	6753	1	0	0	0	0	1	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0123	6752	1	0	1	0	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0124	6742	1	1	0	0	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0125	6743	1	1	0	0	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0126	6754	1	0	0	1	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0127	6752	1	0	0	1	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0128	6751	1	0	0	1	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0129	6753	1	0	0	1	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0130	6743	1	1	0	0	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0131	6753	1	0	0	0	0	1	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0132	6750	1	1	0	0	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0133	6754	1	0	0	0	0	1	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0134	6752	1	0	0	1	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0135	6749	1	1	0	0	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0136	6749	1	0	0	1	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0137	6753	1	0	0	1	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0138	6753	1	0	0	1	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0139	6751	1	0	0	1	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0140	6751	1	1	0	0	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0141	6750	1	1	0	0	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0142	6752	1	0	0	0	0	1	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0143	6754	1	0	0	1	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0144	6755	1	1	0	0	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0145	6758	1	0	0	1	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0146	6757	1	0	0	1	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0147	6757	1	0	0	1	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0148	6755	1	0	0	1	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0149	6758	1	0	0	1	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0150	6753	1	0	0	0	1	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0151	6753	1	0	0	1	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0152	6752	1	0	0	1	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0153	6754	1	1	0	0	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0154	6750	1	0	0	1	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0155	6757	1	0	1	0	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0156	6755	1	0	1	0	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0157	6742	1	0	0	1	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0158	6744	1	0	0	1	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0159	6743	1	0	0	1	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBA57_chr1_228160804_228187257	0/0	t0160	6751	1	0	0	1	0	0	copy fasta	IBA57	chr1	228160804	228187257
IBSP_chr4_87794554_87817435	1/1	t0001	620	360	81	73	150	11	43	copy fasta	IBSP	chr4	87794554	87817435