JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IBSP_chr4_87794554_87817435	0/0	t0002	620	48	0	2	41	2	3	copy fasta	IBSP	chr4	87794554	87817435
IBSP_chr4_87794554_87817435	0/0	t0003	620	31	10	3	16	0	2	copy fasta	IBSP	chr4	87794554	87817435
IBSP_chr4_87794554_87817435	0/0	t0004	620	7	7	0	0	0	0	copy fasta	IBSP	chr4	87794554	87817435
IBSP_chr4_87794554_87817435	0/0	t0005	621	7	0	0	7	0	0	copy fasta	IBSP	chr4	87794554	87817435
IBSP_chr4_87794554_87817435	0/0	t0006	620	1	0	0	0	1	0	copy fasta	IBSP	chr4	87794554	87817435
IBTK_chr6_82164987_82252744	1/1	t0001	1979	180	50	36	57	10	25	copy fasta	IBTK	chr6	82164987	82252744
IBTK_chr6_82164987_82252744	0/0	t0002	1979	101	28	19	42	2	10	copy fasta	IBTK	chr6	82164987	82252744
IBTK_chr6_82164987_82252744	0/0	t0003	1979	3	3	0	0	0	0	copy fasta	IBTK	chr6	82164987	82252744
IBTK_chr6_82164987_82252744	0/0	t0004	1979	2	0	0	2	0	0	copy fasta	IBTK	chr6	82164987	82252744
IBTK_chr6_82164987_82252744	0/0	t0005	1979	1	0	0	1	0	0	copy fasta	IBTK	chr6	82164987	82252744
IBTK_chr6_82164987_82252744	0/0	t0006	1979	1	1	0	0	0	0	copy fasta	IBTK	chr6	82164987	82252744
IBTK_chr6_82164987_82252744	0/0	t0007	1979	1	0	1	0	0	0	copy fasta	IBTK	chr6	82164987	82252744
IBTK_chr6_82164987_82252744	0/0	t0008	1979	1	1	0	0	0	0	copy fasta	IBTK	chr6	82164987	82252744
IBTK_chr6_82164987_82252744	0/0	t0009	1979	1	1	0	0	0	0	copy fasta	IBTK	chr6	82164987	82252744
IBTK_chr6_82164987_82252744	0/0	t0010	1979	1	0	0	0	0	1	copy fasta	IBTK	chr6	82164987	82252744
IBTK_chr6_82164987_82252744	0/0	t0011	1979	1	0	0	1	0	0	copy fasta	IBTK	chr6	82164987	82252744
IBTK_chr6_82164987_82252744	0/0	t0012	1979	1	1	0	0	0	0	copy fasta	IBTK	chr6	82164987	82252744
IBTK_chr6_82164987_82252744	0/0	t0013	1979	1	0	0	1	0	0	copy fasta	IBTK	chr6	82164987	82252744
IBTK_chr6_82164987_82252744	0/0	t0014	1979	1	1	0	0	0	0	copy fasta	IBTK	chr6	82164987	82252744
ICA1L_chr2_202768176_202876766	0/1	t0001	6508	77	10	15	39	6	6	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0002	6514	31	0	3	25	1	2	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0003	6515	25	1	4	20	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	1/0	t0004	6513	24	4	4	12	1	2	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0005	6514	17	8	3	4	0	2	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0006	6510	17	13	4	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0007	6513	10	1	6	0	0	3	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0008	6509	9	0	4	1	4	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0009	6510	6	0	0	6	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0010	6515	6	0	0	6	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0011	6509	5	0	0	4	0	1	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0012	6508	4	0	0	4	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0013	6513	4	3	0	0	0	1	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0014	6513	4	0	2	0	1	1	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0015	6515	3	2	1	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0016	6513	3	0	1	2	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0017	6509	3	3	0	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0018	6514	3	0	2	0	0	1	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0019	6517	2	0	0	2	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0020	6516	2	0	1	1	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0021	6511	2	2	0	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0022	6524	2	2	0	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0023	6509	2	2	0	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0024	6510	2	2	0	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0025	6514	2	0	1	1	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0026	6514	2	2	0	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0027	6513	2	1	1	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0028	6513	2	0	1	0	0	1	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0029	6510	2	0	1	0	0	1	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0030	6509	2	0	0	2	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0031	6498	2	2	0	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766