Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANKRD13C_chr1_70253999_70359722	0/0	t0014	4033	1	0	0	0	0	1	copy fasta	ANKRD13C	chr1	70253999	70359722
ANKRD13C_chr1_70253999_70359722	0/0	t0015	4033	1	1	0	0	0	0	copy fasta	ANKRD13C	chr1	70253999	70359722
ANKRD13C_chr1_70253999_70359722	0/0	t0016	4033	1	0	0	1	0	0	copy fasta	ANKRD13C	chr1	70253999	70359722
ANKRD13C_chr1_70253999_70359722	0/0	t0017	4033	1	0	0	1	0	0	copy fasta	ANKRD13C	chr1	70253999	70359722
ANKRD13C_chr1_70253999_70359722	0/0	t0018	4033	1	0	1	0	0	0	copy fasta	ANKRD13C	chr1	70253999	70359722
ANKRD13C_chr1_70253999_70359722	0/0	t0019	4033	1	0	0	0	0	1	copy fasta	ANKRD13C	chr1	70253999	70359722
ANKRD13C_chr1_70253999_70359722	0/0	t0020	4033	1	0	1	0	0	0	copy fasta	ANKRD13C	chr1	70253999	70359722
ANKRD13C_chr1_70253999_70359722	0/0	t0021	4033	1	0	0	0	0	1	copy fasta	ANKRD13C	chr1	70253999	70359722
ANKRD13C_chr1_70253999_70359722	0/0	t0022	4033	1	0	0	1	0	0	copy fasta	ANKRD13C	chr1	70253999	70359722
ANKRD13C_chr1_70253999_70359722	0/0	t0023	4033	1	1	0	0	0	0	copy fasta	ANKRD13C	chr1	70253999	70359722
ANKRD13C_chr1_70253999_70359722	0/0	t0024	4033	1	0	0	1	0	0	copy fasta	ANKRD13C	chr1	70253999	70359722
ANKRD13C_chr1_70253999_70359722	0/0	t0025	4033	1	0	1	0	0	0	copy fasta	ANKRD13C	chr1	70253999	70359722
ANKRD13C_chr1_70253999_70359722	0/0	t0026	4033	1	1	0	0	0	0	copy fasta	ANKRD13C	chr1	70253999	70359722
ANKRD13C_chr1_70253999_70359722	0/0	t0027	4033	1	0	0	0	0	1	copy fasta	ANKRD13C	chr1	70253999	70359722
ANKRD13C_chr1_70253999_70359722	0/0	t0028	4033	1	1	0	0	0	0	copy fasta	ANKRD13C	chr1	70253999	70359722
ANKRD13C_chr1_70253999_70359722	0/0	t0029	4033	1	1	0	0	0	0	copy fasta	ANKRD13C	chr1	70253999	70359722
ANKRD13D_chr11_67284303_67307484	1/1	t0001	311	312	79	57	134	10	30	copy fasta	ANKRD13D	chr11	67284303	67307484
ANKRD13D_chr11_67284303_67307484	0/0	t0002	311	9	8	1	0	0	0	copy fasta	ANKRD13D	chr11	67284303	67307484
ANKRD13D_chr11_67284303_67307484	0/0	t0003	302	6	0	0	6	0	0	copy fasta	ANKRD13D	chr11	67284303	67307484
ANKRD13D_chr11_67284303_67307484	0/0	t0004	311	3	0	3	0	0	0	copy fasta	ANKRD13D	chr11	67284303	67307484
ANKRD13D_chr11_67284303_67307484	0/0	t0005	314	2	1	1	0	0	0	copy fasta	ANKRD13D	chr11	67284303	67307484
ANKRD13D_chr11_67284303_67307484	0/0	t0006	311	1	1	0	0	0	0	copy fasta	ANKRD13D	chr11	67284303	67307484
ANKRD13D_chr11_67284303_67307484	0/0	t0007	314	1	1	0	0	0	0	copy fasta	ANKRD13D	chr11	67284303	67307484
ANKRD16_chr10_5856616_5894893	1/0	t0001	1649	207	21	42	105	6	32	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/1	t0002	1638	65	31	19	3	7	4	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	t0003	1650	21	1	5	12	2	1	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	t0004	1650	20	4	1	12	0	3	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	t0005	1649	14	6	5	0	2	1	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	t0006	1646	7	6	1	0	0	0	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	t0007	1649	7	1	0	6	0	0	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	t0008	1649	6	5	0	0	1	0	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	t0009	1650	4	0	0	3	0	1	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	t0010	1651	4	0	0	4	0	0	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	t0011	1653	4	4	0	0	0	0	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	t0012	1649	3	2	0	0	0	1	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	t0013	1652	3	2	1	0	0	0	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	t0014	1648	3	0	0	3	0	0	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	t0015	1650	3	0	3	0	0	0	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	t0016	1651	2	0	0	1	0	1	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	t0017	1649	2	2	0	0	0	0	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	t0018	1649	2	0	0	2	0	0	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	t0019	1649	2	2	0	0	0	0	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	t0020	1649	2	0	0	2	0	0	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	t0021	1649	1	1	0	0	0	0	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	t0022	1650	1	0	0	0	0	1	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	t0023	1649	1	0	0	1	0	0	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	t0024	1651	1	0	0	1	0	0	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	t0025	1651	1	1	0	0	0	0	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	t0026	1650	1	1	0	0	0	0	copy fasta	ANKRD16	chr10	5856616	5894893
ANKRD16_chr10_5856616_5894893	0/0	t0027	1650	1	0	0	0	0	1	copy fasta	ANKRD16	chr10	5856616	5894893