JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ICA1L_chr2_202768176_202876766	0/0	t0032	6508	1	0	0	1	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0033	6527	1	1	0	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0034	6508	1	0	0	1	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0035	6508	1	0	0	1	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0036	6516	1	0	0	1	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0037	6514	1	0	1	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0038	6513	1	0	0	1	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0039	6514	1	0	0	0	0	1	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0040	6514	1	1	0	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0041	6527	1	1	0	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0042	6515	1	0	1	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0043	6514	1	1	0	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0044	6514	1	1	0	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0045	6514	1	1	0	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0046	6512	1	0	0	1	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0047	6511	1	0	0	1	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0048	6510	1	0	1	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0049	6509	1	0	0	1	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0050	6510	1	1	0	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0051	6508	1	1	0	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0052	6523	1	1	0	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0053	6514	1	0	0	1	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0054	6509	1	1	0	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0055	6513	1	1	0	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0056	6513	1	0	1	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0057	6511	1	1	0	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0058	6519	1	1	0	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0059	6513	1	0	0	1	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0060	6508	1	1	0	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0061	6508	1	0	0	1	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0062	6508	1	1	0	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0063	6508	1	0	0	0	0	1	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0064	6508	1	0	1	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0065	6523	1	1	0	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0066	6512	1	0	1	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0067	6507	1	0	0	0	1	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0068	6511	1	0	0	1	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0069	6516	1	0	0	1	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0070	6514	1	0	0	1	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0071	6514	1	0	0	0	0	1	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0072	6516	1	0	0	1	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0073	6515	1	1	0	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0074	6514	1	0	0	0	0	1	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0075	6493	1	0	0	1	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0076	6513	1	0	0	1	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0077	6514	1	0	0	0	0	1	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0078	6523	1	1	0	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0079	6525	1	1	0	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0080	6516	1	0	1	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0081	6515	1	0	1	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766