JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ICA1L_chr2_202768176_202876766	0/0	t0082	6514	1	1	0	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0083	6510	1	1	0	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1L_chr2_202768176_202876766	0/0	t0084	6511	1	1	0	0	0	0	copy fasta	ICA1L	chr2	202768176	202876766
ICA1_chr7_8108184_8267167	0/0	t0001	894	103	9	18	56	3	17	copy fasta	ICA1	chr7	8108184	8267167
ICA1_chr7_8108184_8267167	0/0	t0002	893	47	28	10	5	0	4	copy fasta	ICA1	chr7	8108184	8267167
ICA1_chr7_8108184_8267167	1/1	t0003	893	43	18	7	12	0	4	copy fasta	ICA1	chr7	8108184	8267167
ICA1_chr7_8108184_8267167	0/0	t0004	893	30	6	2	18	3	1	copy fasta	ICA1	chr7	8108184	8267167
ICA1_chr7_8108184_8267167	0/0	t0005	891	11	10	1	0	0	0	copy fasta	ICA1	chr7	8108184	8267167
ICA1_chr7_8108184_8267167	0/0	t0006	892	11	4	5	0	1	1	copy fasta	ICA1	chr7	8108184	8267167
ICA1_chr7_8108184_8267167	0/0	t0007	893	10	0	0	9	0	1	copy fasta	ICA1	chr7	8108184	8267167
ICA1_chr7_8108184_8267167	0/0	t0008	894	5	3	0	2	0	0	copy fasta	ICA1	chr7	8108184	8267167
ICA1_chr7_8108184_8267167	0/0	t0009	893	4	0	0	1	1	2	copy fasta	ICA1	chr7	8108184	8267167
ICA1_chr7_8108184_8267167	0/0	t0010	894	3	0	2	0	0	1	copy fasta	ICA1	chr7	8108184	8267167
ICA1_chr7_8108184_8267167	0/0	t0011	892	2	1	0	1	0	0	copy fasta	ICA1	chr7	8108184	8267167
ICA1_chr7_8108184_8267167	0/0	t0012	894	1	1	0	0	0	0	copy fasta	ICA1	chr7	8108184	8267167
ICA1_chr7_8108184_8267167	0/0	t0013	891	1	1	0	0	0	0	copy fasta	ICA1	chr7	8108184	8267167
ICA1_chr7_8108184_8267167	0/0	t0014	893	1	1	0	0	0	0	copy fasta	ICA1	chr7	8108184	8267167
ICA1_chr7_8108184_8267167	0/0	t0015	894	1	0	0	0	0	1	copy fasta	ICA1	chr7	8108184	8267167
ICA1_chr7_8108184_8267167	0/0	t0016	892	1	0	1	0	0	0	copy fasta	ICA1	chr7	8108184	8267167
ICAM1_chr19_10266120_10291615	1/0	t0001	1369	145	31	17	88	1	7	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	t0002	1369	140	5	38	64	9	24	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	t0003	1369	27	15	6	3	2	1	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	t0004	1369	23	8	2	8	2	3	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	t0005	1369	12	0	3	8	0	1	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	t0006	1369	11	11	0	0	0	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	t0007	1368	10	0	8	0	0	2	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	t0008	1369	9	0	0	7	0	2	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	t0009	1367	9	7	2	0	0	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/1	t0010	1371	9	2	5	0	0	1	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	t0011	1369	7	0	0	7	0	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	t0012	1369	7	7	0	0	0	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	t0013	1370	6	0	2	4	0	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	t0014	1369	3	3	0	0	0	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	t0015	1359	3	0	2	0	1	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	t0016	1368	3	3	0	0	0	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	t0017	1369	3	0	1	0	1	1	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	t0018	1370	3	0	0	3	0	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	t0019	1369	3	3	0	0	0	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	t0020	1369	2	0	1	0	1	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	t0021	1368	2	0	0	2	0	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	t0022	1369	1	0	0	0	0	1	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	t0023	1369	1	0	0	0	0	1	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	t0024	1368	1	1	0	0	0	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	t0025	1370	1	0	0	0	0	1	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	t0026	1368	1	0	0	1	0	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	t0027	1371	1	0	0	1	0	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	t0028	1369	1	1	0	0	0	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	t0029	1369	1	1	0	0	0	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	t0030	1369	1	0	0	1	0	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	t0031	1369	1	0	0	0	1	0	copy fasta	ICAM1	chr19	10266120	10291615