JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ICAM1_chr19_10266120_10291615	0/0	t0032	1368	1	0	1	0	0	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	t0033	1369	1	0	0	0	0	1	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	t0034	1369	1	0	0	1	0	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	t0035	1369	1	1	0	0	0	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM1_chr19_10266120_10291615	0/0	t0036	1369	1	1	0	0	0	0	copy fasta	ICAM1	chr19	10266120	10291615
ICAM2_chr17_63997595_64025633	1/1	t0001	308	391	87	76	166	18	42	copy fasta	ICAM2	chr17	63997595	64025633
ICAM2_chr17_63997595_64025633	0/0	t0002	308	1	1	0	0	0	0	copy fasta	ICAM2	chr17	63997595	64025633
ICAM3_chr19_10328776_10344624	1/1	t0001	92	440	94	80	200	18	46	copy fasta	ICAM3	chr19	10328776	10344624
ICAM4_chr19_10281955_10293520	1/1	t0001	475	413	93	83	177	16	42	copy fasta	ICAM4	chr19	10281955	10293520
ICAM4_chr19_10281955_10293520	0/0	t0002	475	11	1	0	8	0	2	copy fasta	ICAM4	chr19	10281955	10293520
ICAM4_chr19_10281955_10293520	0/0	t0003	475	4	0	0	4	0	0	copy fasta	ICAM4	chr19	10281955	10293520
ICAM4_chr19_10281955_10293520	0/0	t0004	475	1	0	1	0	0	0	copy fasta	ICAM4	chr19	10281955	10293520
ICAM4_chr19_10281955_10293520	0/0	t0005	475	1	0	0	1	0	0	copy fasta	ICAM4	chr19	10281955	10293520
ICAM5_chr19_10284952_10301778	1/1	t0001	255	428	95	88	184	16	43	copy fasta	ICAM5	chr19	10284952	10301778
ICAM5_chr19_10284952_10301778	0/0	t0002	255	3	3	0	0	0	0	copy fasta	ICAM5	chr19	10284952	10301778
ICAM5_chr19_10284952_10301778	0/0	t0003	255	1	0	0	0	0	1	copy fasta	ICAM5	chr19	10284952	10301778
ICE1_chr5_5417677_5495220	1/1	t0001	1130	294	78	60	115	15	24	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	t0002	1130	45	0	0	43	1	1	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	t0003	1130	9	0	0	9	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	t0004	1130	5	3	0	2	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	t0005	1130	4	0	0	4	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	t0006	1130	2	2	0	0	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	t0007	1130	2	2	0	0	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	t0008	1130	1	1	0	0	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	t0009	1130	1	0	0	0	0	1	copy fasta	ICE1	chr5	5417677	5495220
ICE1_chr5_5417677_5495220	0/0	t0010	1130	1	0	0	1	0	0	copy fasta	ICE1	chr5	5417677	5495220
ICE2_chr15_60414609_60484142	0/1	t0001	4260	105	12	20	45	4	23	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	t0002	4253	46	17	13	11	2	3	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	t0003	4258	29	2	6	14	5	2	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	t0004	4253	12	4	5	0	1	2	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	t0005	4258	12	8	4	0	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	t0006	4252	8	8	0	0	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	t0007	4258	5	5	0	0	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	t0008	4258	5	5	0	0	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	t0009	4259	5	5	0	0	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	t0010	4260	4	4	0	0	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	t0011	4258	4	4	0	0	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	t0012	4260	3	1	2	0	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	t0013	4260	2	2	0	0	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	t0014	4260	2	2	0	0	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	t0015	4252	2	0	2	0	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	t0016	4259	2	2	0	0	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	t0017	4259	2	2	0	0	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	t0018	4258	2	2	0	0	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	t0019	4258	1	1	0	0	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	t0020	4260	1	0	0	0	1	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	t0021	4260	1	0	0	1	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	t0022	4260	1	0	0	0	0	1	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	t0023	4260	1	0	0	0	0	1	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	t0024	4260	1	0	0	1	0	0	copy fasta	ICE2	chr15	60414609	60484142