JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ICE2_chr15_60414609_60484142	0/0	t0025	4260	1	0	0	1	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	t0026	4259	1	0	0	1	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	t0027	4258	1	0	1	0	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	t0028	4260	1	0	1	0	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	t0029	4260	1	0	0	0	1	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	t0030	4586	1	1	0	0	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	t0031	4253	1	0	1	0	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	1/0	t0032	4258	1	0	0	0	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	t0033	4586	1	1	0	0	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	t0034	4587	1	1	0	0	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	t0035	4254	1	0	1	0	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	t0036	4258	1	1	0	0	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	t0037	4259	1	1	0	0	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICE2_chr15_60414609_60484142	0/0	t0038	4260	1	1	0	0	0	0	copy fasta	ICE2	chr15	60414609	60484142
ICMT_chr1_6216193_6240964	1/1	t0001	3941	175	28	42	77	7	19	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0002	3940	40	0	2	28	2	8	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0003	3965	24	13	2	5	0	4	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0004	3941	18	8	1	6	1	2	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0005	3941	13	12	1	0	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0006	3941	7	7	0	0	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0007	3941	7	7	0	0	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0008	3941	6	5	1	0	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0009	3941	4	4	0	0	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0010	3940	4	0	0	0	3	1	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0011	3942	3	0	0	3	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0012	3941	3	0	0	3	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0013	3941	2	0	1	0	0	1	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0014	3941	2	0	0	2	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0015	3941	2	0	0	2	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0016	3940	2	0	2	0	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0017	3941	2	2	0	0	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0018	3941	2	0	0	2	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0019	3941	2	1	1	0	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0020	3941	1	0	1	0	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0021	3941	1	1	0	0	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0022	3941	1	1	0	0	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0023	3941	1	1	0	0	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0024	3942	1	0	1	0	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0025	3941	1	1	0	0	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0026	3941	1	0	0	0	0	1	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0027	3965	1	1	0	0	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0028	3941	1	0	0	1	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0029	3941	1	0	0	1	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0030	3940	1	0	0	1	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0031	3941	1	0	1	0	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0032	3942	1	0	0	1	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0033	3942	1	0	0	1	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0034	3941	1	0	0	0	0	1	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0035	3941	1	0	0	1	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0036	3941	1	1	0	0	0	0	copy fasta	ICMT	chr1	6216193	6240964