JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ICMT_chr1_6216193_6240964	0/0	t0037	3941	1	0	1	0	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0038	3941	1	0	1	0	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0039	3941	1	0	0	0	0	1	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0040	3941	1	0	0	1	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0041	3941	1	0	0	1	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0042	3941	1	0	0	0	1	0	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0043	3941	1	0	0	1	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0044	3940	1	0	0	1	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0045	3940	1	0	0	1	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0046	3941	1	1	0	0	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0047	3941	1	0	0	0	0	1	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0048	3965	1	1	0	0	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0049	3965	1	0	0	0	0	1	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0050	3989	1	1	0	0	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0051	4013	1	1	0	0	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0052	4013	1	0	0	1	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICMT_chr1_6216193_6240964	0/0	t0053	4013	1	1	0	0	0	0	copy fasta	ICMT	chr1	6216193	6240964
ICOSLG_chr21_44217991_44245943	0/1	t0001	6172	17	0	8	6	0	2	copy fasta	ICOSLG	chr21	44217991	44245943
ICOSLG_chr21_44217991_44245943	0/0	t0002	6172	11	0	4	6	0	1	copy fasta	ICOSLG	chr21	44217991	44245943
ICOSLG_chr21_44217991_44245943	0/0	t0003	6172	2	2	0	0	0	0	copy fasta	ICOSLG	chr21	44217991	44245943
ICOSLG_chr21_44217991_44245943	0/0	t0004	6172	1	0	1	0	0	0	copy fasta	ICOSLG	chr21	44217991	44245943
ICOSLG_chr21_44217991_44245943	0/0	t0005	6173	1	0	0	1	0	0	copy fasta	ICOSLG	chr21	44217991	44245943
ICOSLG_chr21_44217991_44245943	0/0	t0006	6225	1	1	0	0	0	0	copy fasta	ICOSLG	chr21	44217991	44245943
ICOSLG_chr21_44217991_44245943	0/0	t0007	6170	1	0	0	0	0	1	copy fasta	ICOSLG	chr21	44217991	44245943
ICOSLG_chr21_44217991_44245943	0/0	t0008	6172	1	1	0	0	0	0	copy fasta	ICOSLG	chr21	44217991	44245943
ICOSLG_chr21_44217991_44245943	0/0	t0009	6172	1	0	1	0	0	0	copy fasta	ICOSLG	chr21	44217991	44245943
ICOSLG_chr21_44217991_44245943	0/0	t0010	6170	1	0	0	1	0	0	copy fasta	ICOSLG	chr21	44217991	44245943
ICOSLG_chr21_44217991_44245943	0/0	t0011	6172	1	1	0	0	0	0	copy fasta	ICOSLG	chr21	44217991	44245943
ICOSLG_chr21_44217991_44245943	0/0	t0012	6208	1	1	0	0	0	0	copy fasta	ICOSLG	chr21	44217991	44245943
ICOSLG_chr21_44217991_44245943	0/0	t0013	6260	1	1	0	0	0	0	copy fasta	ICOSLG	chr21	44217991	44245943
ICOSLG_chr21_44217991_44245943	0/0	t0014	6262	1	1	0	0	0	0	copy fasta	ICOSLG	chr21	44217991	44245943
ICOS_chr2_203931763_203966577	1/0	t0001	2031	288	41	53	150	17	26	copy fasta	ICOS	chr2	203931763	203966577
ICOS_chr2_203931763_203966577	0/0	t0002	2031	79	13	12	34	0	20	copy fasta	ICOS	chr2	203931763	203966577
ICOS_chr2_203931763_203966577	0/1	t0003	2031	30	10	9	10	0	0	copy fasta	ICOS	chr2	203931763	203966577
ICOS_chr2_203931763_203966577	0/0	t0004	2031	12	12	0	0	0	0	copy fasta	ICOS	chr2	203931763	203966577
ICOS_chr2_203931763_203966577	0/0	t0005	2031	4	4	0	0	0	0	copy fasta	ICOS	chr2	203931763	203966577
ICOS_chr2_203931763_203966577	0/0	t0006	2031	3	2	1	0	0	0	copy fasta	ICOS	chr2	203931763	203966577
ICOS_chr2_203931763_203966577	0/0	t0007	2031	2	2	0	0	0	0	copy fasta	ICOS	chr2	203931763	203966577
ICOS_chr2_203931763_203966577	0/0	t0008	2031	2	0	0	2	0	0	copy fasta	ICOS	chr2	203931763	203966577
ICOS_chr2_203931763_203966577	0/0	t0009	2031	2	2	0	0	0	0	copy fasta	ICOS	chr2	203931763	203966577
ICOS_chr2_203931763_203966577	0/0	t0010	2031	2	2	0	0	0	0	copy fasta	ICOS	chr2	203931763	203966577
ICOS_chr2_203931763_203966577	0/0	t0011	2031	1	0	0	0	0	1	copy fasta	ICOS	chr2	203931763	203966577
ICOS_chr2_203931763_203966577	0/0	t0012	2031	1	0	0	0	1	0	copy fasta	ICOS	chr2	203931763	203966577
ICOS_chr2_203931763_203966577	0/0	t0013	2031	1	0	1	0	0	0	copy fasta	ICOS	chr2	203931763	203966577
ICOS_chr2_203931763_203966577	0/0	t0014	2031	1	0	0	0	0	1	copy fasta	ICOS	chr2	203931763	203966577
ICOS_chr2_203931763_203966577	0/0	t0015	2031	1	1	0	0	0	0	copy fasta	ICOS	chr2	203931763	203966577
ICOS_chr2_203931763_203966577	0/0	t0016	2031	1	1	0	0	0	0	copy fasta	ICOS	chr2	203931763	203966577
ID1_chr20_31600289_31611510	1/1	t0001	516	193	20	43	90	8	30	copy fasta	ID1	chr20	31600289	31611510
ID1_chr20_31600289_31611510	0/0	t0002	516	76	43	26	0	3	4	copy fasta	ID1	chr20	31600289	31611510
ID1_chr20_31600289_31611510	0/0	t0003	516	14	13	1	0	0	0	copy fasta	ID1	chr20	31600289	31611510