JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ID1_chr20_31600289_31611510	0/0	t0004	515	4	4	0	0	0	0	copy fasta	ID1	chr20	31600289	31611510
ID1_chr20_31600289_31611510	0/0	t0005	516	3	0	3	0	0	0	copy fasta	ID1	chr20	31600289	31611510
ID1_chr20_31600289_31611510	0/0	t0006	516	2	2	0	0	0	0	copy fasta	ID1	chr20	31600289	31611510
ID1_chr20_31600289_31611510	0/0	t0007	516	2	2	0	0	0	0	copy fasta	ID1	chr20	31600289	31611510
ID1_chr20_31600289_31611510	0/0	t0008	516	2	2	0	0	0	0	copy fasta	ID1	chr20	31600289	31611510
ID1_chr20_31600289_31611510	0/0	t0009	516	1	0	1	0	0	0	copy fasta	ID1	chr20	31600289	31611510
ID1_chr20_31600289_31611510	0/0	t0010	516	1	0	0	0	1	0	copy fasta	ID1	chr20	31600289	31611510
ID2_chr2_8677056_8689461	1/1	t0001	895	339	76	60	151	15	35	copy fasta	ID2	chr2	8677056	8689461
ID2_chr2_8677056_8689461	0/0	t0002	894	37	17	8	4	1	7	copy fasta	ID2	chr2	8677056	8689461
ID2_chr2_8677056_8689461	0/0	t0003	895	6	0	2	0	0	4	copy fasta	ID2	chr2	8677056	8689461
ID2_chr2_8677056_8689461	0/0	t0004	890	3	0	0	3	0	0	copy fasta	ID2	chr2	8677056	8689461
ID2_chr2_8677056_8689461	0/0	t0005	895	2	1	1	0	0	0	copy fasta	ID2	chr2	8677056	8689461
ID2_chr2_8677056_8689461	0/0	t0006	895	2	2	0	0	0	0	copy fasta	ID2	chr2	8677056	8689461
ID2_chr2_8677056_8689461	0/0	t0007	895	1	0	0	1	0	0	copy fasta	ID2	chr2	8677056	8689461
ID2_chr2_8677056_8689461	0/0	t0008	895	1	0	1	0	0	0	copy fasta	ID2	chr2	8677056	8689461
ID2_chr2_8677056_8689461	0/0	t0009	895	1	0	0	1	0	0	copy fasta	ID2	chr2	8677056	8689461
ID2_chr2_8677056_8689461	0/0	t0010	895	1	0	0	1	0	0	copy fasta	ID2	chr2	8677056	8689461
ID2_chr2_8677056_8689461	0/0	t0011	895	1	0	0	1	0	0	copy fasta	ID2	chr2	8677056	8689461
ID3_chr1_23552926_23564501	0/1	t0001	591	266	50	42	134	6	33	copy fasta	ID3	chr1	23552926	23564501
ID3_chr1_23552926_23564501	1/0	t0002	591	89	30	32	12	7	7	copy fasta	ID3	chr1	23552926	23564501
ID3_chr1_23552926_23564501	0/0	t0003	591	67	13	12	33	5	4	copy fasta	ID3	chr1	23552926	23564501
ID3_chr1_23552926_23564501	0/0	t0004	591	4	0	0	4	0	0	copy fasta	ID3	chr1	23552926	23564501
ID3_chr1_23552926_23564501	0/0	t0005	591	3	3	0	0	0	0	copy fasta	ID3	chr1	23552926	23564501
ID3_chr1_23552926_23564501	0/0	t0006	591	2	0	0	2	0	0	copy fasta	ID3	chr1	23552926	23564501
ID3_chr1_23552926_23564501	0/0	t0007	591	1	1	0	0	0	0	copy fasta	ID3	chr1	23552926	23564501
ID3_chr1_23552926_23564501	0/0	t0008	591	1	1	0	0	0	0	copy fasta	ID3	chr1	23552926	23564501
ID3_chr1_23552926_23564501	0/0	t0009	591	1	0	0	1	0	0	copy fasta	ID3	chr1	23552926	23564501
ID4_chr6_19832370_19847197	0/1	t0001	3388	140	18	10	96	3	12	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0002	3386	80	0	10	58	2	10	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0003	3387	27	5	7	4	1	10	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0004	3388	21	1	2	13	2	3	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0005	3389	20	5	6	4	3	2	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0006	3388	20	0	4	15	0	1	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0007	3385	13	12	1	0	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0008	3385	11	8	1	0	1	1	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0009	3385	11	8	3	0	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0010	3386	10	0	8	2	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0011	3385	10	0	8	0	2	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0012	3389	10	1	3	0	3	3	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0013	3388	9	1	3	5	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0014	3388	7	5	2	0	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0015	3387	7	7	0	0	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0016	3386	6	6	0	0	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0017	3388	6	1	3	2	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0018	3383	4	0	4	0	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0019	3388	4	2	1	1	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0020	3385	3	3	0	0	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0021	3385	2	0	1	0	0	1	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0022	3387	2	0	2	0	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0023	3386	2	2	0	0	0	0	copy fasta	ID4	chr6	19832370	19847197