JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ID4_chr6_19832370_19847197	0/0	t0024	3384	2	0	0	2	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	1/0	t0025	3388	2	0	1	0	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0026	3388	2	0	0	2	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0027	3388	2	0	0	0	0	2	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0028	3388	2	0	1	0	0	1	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0029	3388	2	2	0	0	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0030	3388	2	2	0	0	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0031	3386	1	1	0	0	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0032	3386	1	1	0	0	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0033	3384	1	1	0	0	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0034	3386	1	0	0	1	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0035	3387	1	0	0	0	1	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0036	3388	1	0	1	0	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0037	3387	1	1	0	0	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0038	3385	1	0	1	0	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0039	3387	1	1	0	0	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0040	3385	1	1	0	0	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0041	3389	1	0	0	1	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0042	3388	1	0	0	1	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0043	3388	1	0	0	1	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0044	3387	1	0	0	0	0	1	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0045	3387	1	0	0	0	0	1	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0046	3384	1	0	0	1	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0047	3388	1	0	0	1	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0048	3389	1	0	0	1	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0049	3388	1	0	0	1	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0050	3388	1	0	0	1	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0051	3388	1	1	0	0	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0052	3388	1	0	0	1	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0053	3388	1	0	0	0	0	1	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0054	3388	1	0	0	1	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0055	3388	1	0	0	1	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0056	3386	1	0	0	0	0	1	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0057	3388	1	0	0	1	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0058	3387	1	0	0	1	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0059	3387	1	0	0	1	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0060	3387	1	0	1	0	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	t0061	3386	1	0	0	1	0	0	copy fasta	ID4	chr6	19832370	19847197
IDE_chr10_92446684_92579093	1/1	t0001	2835	170	36	38	58	10	26	copy fasta	IDE	chr10	92446684	92579093
IDE_chr10_92446684_92579093	0/0	t0002	2835	66	16	10	37	0	3	copy fasta	IDE	chr10	92446684	92579093
IDE_chr10_92446684_92579093	0/0	t0003	2836	16	0	11	4	0	1	copy fasta	IDE	chr10	92446684	92579093
IDE_chr10_92446684_92579093	0/0	t0004	2833	13	0	4	9	0	0	copy fasta	IDE	chr10	92446684	92579093
IDE_chr10_92446684_92579093	0/0	t0005	2835	12	12	0	0	0	0	copy fasta	IDE	chr10	92446684	92579093
IDE_chr10_92446684_92579093	0/0	t0006	2835	8	6	2	0	0	0	copy fasta	IDE	chr10	92446684	92579093
IDE_chr10_92446684_92579093	0/0	t0007	2835	8	0	0	8	0	0	copy fasta	IDE	chr10	92446684	92579093
IDE_chr10_92446684_92579093	0/0	t0008	2837	7	1	2	0	4	0	copy fasta	IDE	chr10	92446684	92579093
IDE_chr10_92446684_92579093	0/0	t0009	2835	3	0	1	0	0	2	copy fasta	IDE	chr10	92446684	92579093
IDE_chr10_92446684_92579093	0/0	t0010	2835	2	0	2	0	0	0	copy fasta	IDE	chr10	92446684	92579093
IDE_chr10_92446684_92579093	0/0	t0011	2835	2	1	1	0	0	0	copy fasta	IDE	chr10	92446684	92579093
IDE_chr10_92446684_92579093	0/0	t0012	2835	2	2	0	0	0	0	copy fasta	IDE	chr10	92446684	92579093