JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IDE_chr10_92446684_92579093	0/0	t0013	2835	2	0	0	0	0	2	copy fasta	IDE	chr10	92446684	92579093
IDE_chr10_92446684_92579093	0/0	t0014	2835	1	0	1	0	0	0	copy fasta	IDE	chr10	92446684	92579093
IDE_chr10_92446684_92579093	0/0	t0015	2835	1	1	0	0	0	0	copy fasta	IDE	chr10	92446684	92579093
IDE_chr10_92446684_92579093	0/0	t0016	2835	1	1	0	0	0	0	copy fasta	IDE	chr10	92446684	92579093
IDH1_chr2_208231229_208260071	0/1	t0001	1074	337	78	60	151	12	35	copy fasta	IDH1	chr2	208231229	208260071
IDH1_chr2_208231229_208260071	1/0	t0002	1074	6	5	0	0	0	0	copy fasta	IDH1	chr2	208231229	208260071
IDH1_chr2_208231229_208260071	0/0	t0003	1074	4	4	0	0	0	0	copy fasta	IDH1	chr2	208231229	208260071
IDH1_chr2_208231229_208260071	0/0	t0004	1074	1	1	0	0	0	0	copy fasta	IDH1	chr2	208231229	208260071
IDH1_chr2_208231229_208260071	0/0	t0005	1074	1	1	0	0	0	0	copy fasta	IDH1	chr2	208231229	208260071
IDH1_chr2_208231229_208260071	0/0	t0006	1074	1	0	0	1	0	0	copy fasta	IDH1	chr2	208231229	208260071
IDH1_chr2_208231229_208260071	0/0	t0007	1074	1	0	0	1	0	0	copy fasta	IDH1	chr2	208231229	208260071
IDH1_chr2_208231229_208260071	0/0	t0008	1074	1	0	0	0	0	1	copy fasta	IDH1	chr2	208231229	208260071
IDH1_chr2_208231229_208260071	0/0	t0009	1074	1	1	0	0	0	0	copy fasta	IDH1	chr2	208231229	208260071
IDH1_chr2_208231229_208260071	0/0	t0010	1074	1	1	0	0	0	0	copy fasta	IDH1	chr2	208231229	208260071
IDH1_chr2_208231229_208260071	0/0	t0011	1074	1	0	1	0	0	0	copy fasta	IDH1	chr2	208231229	208260071
IDH1_chr2_208231229_208260071	0/0	t0012	1074	1	0	0	1	0	0	copy fasta	IDH1	chr2	208231229	208260071
IDH1_chr2_208231229_208260071	0/0	t0013	1074	1	1	0	0	0	0	copy fasta	IDH1	chr2	208231229	208260071
IDH1_chr2_208231229_208260071	0/0	t0014	1074	1	0	1	0	0	0	copy fasta	IDH1	chr2	208231229	208260071
IDH2_chr15_90078045_90107468	0/0	t0001	1301	138	16	25	78	1	18	copy fasta	IDH2	chr15	90078045	90107468
IDH2_chr15_90078045_90107468	1/0	t0002	1300	75	34	7	22	4	7	copy fasta	IDH2	chr15	90078045	90107468
IDH2_chr15_90078045_90107468	0/0	t0003	1302	59	1	15	34	2	7	copy fasta	IDH2	chr15	90078045	90107468
IDH2_chr15_90078045_90107468	0/0	t0004	1299	28	0	3	25	0	0	copy fasta	IDH2	chr15	90078045	90107468
IDH2_chr15_90078045_90107468	0/0	t0005	1303	23	2	7	5	4	5	copy fasta	IDH2	chr15	90078045	90107468
IDH2_chr15_90078045_90107468	0/1	t0006	1302	22	7	9	4	0	1	copy fasta	IDH2	chr15	90078045	90107468
IDH2_chr15_90078045_90107468	0/0	t0007	1303	16	1	6	4	3	2	copy fasta	IDH2	chr15	90078045	90107468
IDH2_chr15_90078045_90107468	0/0	t0008	1300	16	0	1	15	0	0	copy fasta	IDH2	chr15	90078045	90107468
IDH2_chr15_90078045_90107468	0/0	t0009	1301	13	3	6	0	2	2	copy fasta	IDH2	chr15	90078045	90107468
IDH2_chr15_90078045_90107468	0/0	t0010	1295	11	11	0	0	0	0	copy fasta	IDH2	chr15	90078045	90107468
IDH2_chr15_90078045_90107468	0/0	t0011	1281	10	8	1	0	0	1	copy fasta	IDH2	chr15	90078045	90107468
IDH2_chr15_90078045_90107468	0/0	t0012	1304	6	3	1	0	0	2	copy fasta	IDH2	chr15	90078045	90107468
IDH2_chr15_90078045_90107468	0/0	t0013	1299	5	2	0	1	1	1	copy fasta	IDH2	chr15	90078045	90107468
IDH2_chr15_90078045_90107468	0/0	t0014	1303	3	3	0	0	0	0	copy fasta	IDH2	chr15	90078045	90107468
IDH2_chr15_90078045_90107468	0/0	t0015	1304	3	1	1	1	0	0	copy fasta	IDH2	chr15	90078045	90107468
IDH2_chr15_90078045_90107468	0/0	t0016	1311	2	2	0	0	0	0	copy fasta	IDH2	chr15	90078045	90107468
IDH2_chr15_90078045_90107468	0/0	t0017	1301	1	0	1	0	0	0	copy fasta	IDH2	chr15	90078045	90107468
IDH2_chr15_90078045_90107468	0/0	t0018	1300	1	0	1	0	0	0	copy fasta	IDH2	chr15	90078045	90107468
IDH2_chr15_90078045_90107468	0/0	t0019	1303	1	0	0	1	0	0	copy fasta	IDH2	chr15	90078045	90107468
IDH2_chr15_90078045_90107468	0/0	t0020	1301	1	0	0	1	0	0	copy fasta	IDH2	chr15	90078045	90107468
IDH2_chr15_90078045_90107468	0/0	t0021	1288	1	0	0	0	1	0	copy fasta	IDH2	chr15	90078045	90107468
IDH2_chr15_90078045_90107468	0/0	t0022	1286	1	0	0	1	0	0	copy fasta	IDH2	chr15	90078045	90107468
IDH2_chr15_90078045_90107468	0/0	t0023	1285	1	0	0	1	0	0	copy fasta	IDH2	chr15	90078045	90107468
IDH2_chr15_90078045_90107468	0/0	t0024	1300	1	0	0	0	0	1	copy fasta	IDH2	chr15	90078045	90107468
IDH2_chr15_90078045_90107468	0/0	t0025	1301	1	0	0	0	0	1	copy fasta	IDH2	chr15	90078045	90107468
IDH2_chr15_90078045_90107468	0/0	t0026	1301	1	0	0	1	0	0	copy fasta	IDH2	chr15	90078045	90107468
IDH3A_chr15_78144362_78176945	1/0	t0001	2983	229	37	34	133	4	20	copy fasta	IDH3A	chr15	78144362	78176945
IDH3A_chr15_78144362_78176945	0/1	t0002	2983	39	5	19	1	3	10	copy fasta	IDH3A	chr15	78144362	78176945
IDH3A_chr15_78144362_78176945	0/0	t0003	2983	27	12	2	13	0	0	copy fasta	IDH3A	chr15	78144362	78176945
IDH3A_chr15_78144362_78176945	0/0	t0004	2983	24	5	5	3	2	9	copy fasta	IDH3A	chr15	78144362	78176945
IDH3A_chr15_78144362_78176945	0/0	t0005	2983	20	17	2	0	0	1	copy fasta	IDH3A	chr15	78144362	78176945
IDH3A_chr15_78144362_78176945	0/0	t0006	2984	8	0	0	7	0	1	copy fasta	IDH3A	chr15	78144362	78176945