JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IDH3A_chr15_78144362_78176945	0/0	t0007	2983	6	0	0	6	0	0	copy fasta	IDH3A	chr15	78144362	78176945
IDH3A_chr15_78144362_78176945	0/0	t0008	2984	5	1	0	4	0	0	copy fasta	IDH3A	chr15	78144362	78176945
IDH3A_chr15_78144362_78176945	0/0	t0009	2967	4	4	0	0	0	0	copy fasta	IDH3A	chr15	78144362	78176945
IDH3A_chr15_78144362_78176945	0/0	t0010	2983	3	0	0	3	0	0	copy fasta	IDH3A	chr15	78144362	78176945
IDH3A_chr15_78144362_78176945	0/0	t0011	2983	3	0	3	0	0	0	copy fasta	IDH3A	chr15	78144362	78176945
IDH3A_chr15_78144362_78176945	0/0	t0012	2983	2	0	0	2	0	0	copy fasta	IDH3A	chr15	78144362	78176945
IDH3A_chr15_78144362_78176945	0/0	t0013	2983	2	1	1	0	0	0	copy fasta	IDH3A	chr15	78144362	78176945
IDH3A_chr15_78144362_78176945	0/0	t0014	2983	2	0	2	0	0	0	copy fasta	IDH3A	chr15	78144362	78176945
IDH3A_chr15_78144362_78176945	0/0	t0015	2983	2	0	0	2	0	0	copy fasta	IDH3A	chr15	78144362	78176945
IDH3A_chr15_78144362_78176945	0/0	t0016	2983	1	0	1	0	0	0	copy fasta	IDH3A	chr15	78144362	78176945
IDH3A_chr15_78144362_78176945	0/0	t0017	2983	1	0	0	1	0	0	copy fasta	IDH3A	chr15	78144362	78176945
IDH3A_chr15_78144362_78176945	0/0	t0018	2983	1	0	0	1	0	0	copy fasta	IDH3A	chr15	78144362	78176945
IDH3A_chr15_78144362_78176945	0/0	t0019	2983	1	1	0	0	0	0	copy fasta	IDH3A	chr15	78144362	78176945
IDH3A_chr15_78144362_78176945	0/0	t0020	2983	1	0	0	1	0	0	copy fasta	IDH3A	chr15	78144362	78176945
IDH3A_chr15_78144362_78176945	0/0	t0021	2983	1	0	0	1	0	0	copy fasta	IDH3A	chr15	78144362	78176945
IDH3A_chr15_78144362_78176945	0/0	t0022	2983	1	0	0	0	1	0	copy fasta	IDH3A	chr15	78144362	78176945
IDH3A_chr15_78144362_78176945	0/0	t0023	2983	1	0	1	0	0	0	copy fasta	IDH3A	chr15	78144362	78176945
IDH3A_chr15_78144362_78176945	0/0	t0024	2983	1	0	0	0	0	1	copy fasta	IDH3A	chr15	78144362	78176945
IDH3A_chr15_78144362_78176945	0/0	t0025	2983	1	1	0	0	0	0	copy fasta	IDH3A	chr15	78144362	78176945
IDH3B_chr20_2653395_2669216	1/1	t0001	385	408	64	81	197	18	46	copy fasta	IDH3B	chr20	2653395	2669216
IDH3B_chr20_2653395_2669216	0/0	t0002	385	29	26	3	0	0	0	copy fasta	IDH3B	chr20	2653395	2669216
IDH3B_chr20_2653395_2669216	0/0	t0003	385	2	2	0	0	0	0	copy fasta	IDH3B	chr20	2653395	2669216
IDH3B_chr20_2653395_2669216	0/0	t0004	385	1	0	0	1	0	0	copy fasta	IDH3B	chr20	2653395	2669216
IDH3G_chrX_153780768_153799375	1/1	t0001	154	296	76	54	123	11	30	copy fasta	IDH3G	chrX	153780768	153799375
IDH3G_chrX_153780768_153799375	0/0	t0002	155	1	0	0	1	0	0	copy fasta	IDH3G	chrX	153780768	153799375
IDH3G_chrX_153780768_153799375	0/0	t0003	154	1	0	0	1	0	0	copy fasta	IDH3G	chrX	153780768	153799375
IDH3G_chrX_153780768_153799375	0/0	t0004	153	1	0	0	1	0	0	copy fasta	IDH3G	chrX	153780768	153799375
IDI1_chr10_1034419_1054119	0/0	t0001	1887	301	61	58	136	12	34	copy fasta	IDI1	chr10	1034419	1054119
IDI1_chr10_1034419_1054119	0/1	t0002	1887	68	4	12	35	5	11	copy fasta	IDI1	chr10	1034419	1054119
IDI1_chr10_1034419_1054119	0/0	t0003	1885	31	1	5	24	0	1	copy fasta	IDI1	chr10	1034419	1054119
IDI1_chr10_1034419_1054119	0/0	t0004	1886	19	18	1	0	0	0	copy fasta	IDI1	chr10	1034419	1054119
IDI1_chr10_1034419_1054119	1/0	t0005	1885	7	6	0	0	0	0	copy fasta	IDI1	chr10	1034419	1054119
IDI1_chr10_1034419_1054119	0/0	t0006	1885	3	3	0	0	0	0	copy fasta	IDI1	chr10	1034419	1054119
IDI1_chr10_1034419_1054119	0/0	t0007	1887	2	1	0	1	0	0	copy fasta	IDI1	chr10	1034419	1054119
IDI1_chr10_1034419_1054119	0/0	t0008	1887	1	0	0	1	0	0	copy fasta	IDI1	chr10	1034419	1054119
IDI1_chr10_1034419_1054119	0/0	t0009	1887	1	0	0	1	0	0	copy fasta	IDI1	chr10	1034419	1054119
IDI1_chr10_1034419_1054119	0/0	t0010	1887	1	0	0	1	0	0	copy fasta	IDI1	chr10	1034419	1054119
IDI1_chr10_1034419_1054119	0/0	t0011	1887	1	0	0	0	1	0	copy fasta	IDI1	chr10	1034419	1054119
IDI1_chr10_1034419_1054119	0/0	t0012	1887	1	0	0	1	0	0	copy fasta	IDI1	chr10	1034419	1054119
IDI1_chr10_1034419_1054119	0/0	t0013	1886	1	1	0	0	0	0	copy fasta	IDI1	chr10	1034419	1054119
IDI1_chr10_1034419_1054119	0/0	t0014	1887	1	1	0	0	0	0	copy fasta	IDI1	chr10	1034419	1054119
IDI2_chr10_1013910_1030859	0/0	t0001	674	213	29	41	107	6	30	copy fasta	IDI2	chr10	1013910	1030859
IDI2_chr10_1013910_1030859	0/1	t0002	673	127	34	17	57	6	12	copy fasta	IDI2	chr10	1013910	1030859
IDI2_chr10_1013910_1030859	0/0	t0003	673	30	2	5	21	0	2	copy fasta	IDI2	chr10	1013910	1030859
IDI2_chr10_1013910_1030859	0/0	t0004	673	26	25	1	0	0	0	copy fasta	IDI2	chr10	1013910	1030859
IDI2_chr10_1013910_1030859	0/0	t0005	673	22	1	14	0	5	2	copy fasta	IDI2	chr10	1013910	1030859
IDI2_chr10_1013910_1030859	0/0	t0006	674	8	0	3	5	0	0	copy fasta	IDI2	chr10	1013910	1030859
IDI2_chr10_1013910_1030859	0/0	t0007	674	2	0	0	0	0	2	copy fasta	IDI2	chr10	1013910	1030859
IDI2_chr10_1013910_1030859	0/0	t0008	674	1	1	0	0	0	0	copy fasta	IDI2	chr10	1013910	1030859
IDI2_chr10_1013910_1030859	0/0	t0009	673	1	0	0	0	1	0	copy fasta	IDI2	chr10	1013910	1030859